PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G159300.1.p
Common NameGLYMA_07G159300, LOC100819004
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SBP
Protein Properties Length: 1020aa    MW: 112672 Da    PI: 8.0363
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G159300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1291.7e-40102179178
                          --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          +Cqv++C++dls+ak+yhrrhkvCe+hska+++l+++++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  Glyma.07G159300.1.p 102 MCQVDNCREDLSKAKDYHRRHKVCEAHSKASKALLANQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 179
                          6**************************************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.0E-3497164IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.889100177IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.22E-37101181IPR004333Transcription factor, SBP-box
PfamPF031109.2E-30103176IPR004333Transcription factor, SBP-box
SuperFamilySSF484031.95E-5766914IPR020683Ankyrin repeat-containing domain
CDDcd002045.21E-4813912No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1020 aa     Download sequence    Send to blast
MEKVAPPPIL MHRKRDLSYD IVSAGPNESW RWEWDSVRFA GKPPPPPPLS PNNDVVFEAE  60
SVVPPLQLKL GGTTRVNNNN ININVSNKRV RSGSPGTASY PMCQVDNCRE DLSKAKDYHR  120
RHKVCEAHSK ASKALLANQM QRFCQQCSRF HPLSEFDEGK RSCRRRLAGH NRRRRKTQPE  180
DVTSATPAPA AAANLEIFNL LTAIAGASQG KFEEKRSQVS DREQLVQILN KIPLPADLAT  240
KLLDAGSGNV NGKKDHVQLQ TPSSSYQCHE SHDLLNHTPA APLTMDLLAV LSTTLSGGSA  300
PDSSASPSQN RSCSSDGGSA DQTRQQQFFS VGGERSSSSS QSPVEDSDCQ EVRVNLPLQL  360
FSSSPEDDSL PKLASSRKYF SSDSSNPAEE RSPSSSPPIV EMQFDLQDGA RGLKPESISS  420
GRGVNANKEA SQSHSSNISL DLFKGSNNWI QQPSSLQSVP FQAGYTSSGS DHSPPSLNSD  480
AQDRTGRIMF KLFDKHPSHF PGTLRAQIYN WLSNRPSDME SYIRPGCVVL SIYASMSSAD  540
WERLEENFLQ HVHSLIQNSD SDFWRNGRFL VHSGSRLVSH KDGKIRICKP WRTWKSPELI  600
SVSPLAIVSG QETSISLKGR NLSTLGTKIH CTGTGSYASA EVIGSAHSGV MYDKIKLSGF  660
KVQDVSPGVL GRCFIEVENG FKGNSFPVII ADETICKELR PLESEFDEEE KICDAISEEH  720
EHHFGRPRSR EEALHFLNEL GWLFQRERFS YVHEVPCYSL DRFKFVLIFA VERNCCMLIK  780
TLLDVLVGKH LQGEWLSTGS VEMLNAIQLL NRAVKGKYVG MVDLLIHYSI PSKNGTSRKY  840
VFPPNLEGPG GITPLHLAAC TSGSESVVDS LTSDPQEIGL KCWESLVDAN GQSPHAYAMM  900
RNNDSYNALV ARKLADRQRG EISVTIANAI EQQSLRVELK QKQSYLVKRG QSSCAKCANA  960
EIRYNRRVPG SHGLLHRPFI YSMLAVAAVC VCVCVFFRGR PFVGSVAPFS WENLDYGTM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-3293176184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.143170.0leaf| meristem| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in vasculature of aerial parts. Expressed in cotyledons and leaf petioles. {ECO:0000269|PubMed:15703061}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G159300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353300.0AC235330.1 Glycine max strain Williams 82 clone GM_WBb0082G12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003530322.10.0squamosa promoter-binding-like protein 14 isoform X1
RefseqXP_028240597.10.0squamosa promoter-binding-like protein 14 isoform X1
SwissprotQ8RY950.0SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBLA0A445JXD10.0A0A445JXD1_GLYSO; Squamosa promoter-binding-like protein 14 isoform A
TrEMBLI1KKM70.0I1KKM7_SOYBN; Uncharacterized protein
STRINGGLYMA07G19770.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96943139
Representative plantOGRP71381115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Liu J, et al.
    Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.).
    Front Plant Sci, 2016. 7: p. 21
    [PMID:26870051]