PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G158200.1.p
Common NameGLYMA_07G158200, LOC100807789
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 534aa    MW: 59012 Da    PI: 8.8081
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G158200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000137393323
                         ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                         C+ C+k F r  nL+ H r H
  Glyma.07G158200.1.p 73 CEVCNKGFQREQNLQLHRRGH 93
                         *******************88 PP

2zf-C2H2120.00063147169123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k +  +s+ k H +t+
  Glyma.07G158200.1.p 147 WKCDKCSKKYAVQSDWKAHSKTC 169
                          58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.48E-77093No hitNo description
Gene3DG3DSA:3.30.160.601.0E-57093IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.977193IPR007087Zinc finger, C2H2
SMARTSM003550.0257193IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM00355130112142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.9E-5135168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.48E-7142167No hitNo description
SMARTSM00355150147167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MAAPFSAASL FAIREEDQNQ MKQQQHSSTP SSSTTPAAPP QKKRRNQPGT PYPDAEVIAL  60
SPKTLMATNR FLCEVCNKGF QREQNLQLHR RGHNLPWKLK QKTNKEPKRK VYLCPEPTCV  120
HHDPSRALGD LTGIKKHYSR KHGEKKWKCD KCSKKYAVQS DWKAHSKTCG TREYRCDCGT  180
LFSRRDSFIT HRAFCDALAQ ESARDQPPNL SSAISNQLYG NSNNISLGLS QMGPQIPSIH  240
DQNHQSSDLL HFGGAPRTGQ FDHILPPNIA SSSPFRPSMQ TPPFFMQEPN QTYHDSNKPF  300
QGLIQLSDLN NNNAPSGSNF FNLPFLSNRA NKNNNYSEEQ QQFNTAEESN FFSESTMNIG  360
TDHQANSTTT APSLFSTNSL QNTNISHMSA TALLQKAAQM GSTSSSNHNI INNNTTNNNP  420
SASSILRSLA SKSDQRQLGG GAGNYATIFN NSVQEMMDIS GFEAYDHHGG MNKEQKLGVG  480
GSDRLTRDFL GVAQQQQQQQ REGFNLVSSL ESETNNNNAA PSGQSFGSDG NFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-34143204364Zinc finger protein JACKDAW
5b3h_F4e-34143204364Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.507330.0leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G158200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-157AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003530314.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_028240589.10.0protein indeterminate-domain 5, chloroplastic-like
SwissprotQ8GYC11e-129IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A0B2NPE20.0A0A0B2NPE2_GLYSO; Protein indeterminate-domain 4, chloroplastic
TrEMBLK7L2040.0K7L204_SOYBN; Uncharacterized protein
STRINGGLYMA07G19540.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-113indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]