PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G091600.1.p
Common NameGLYMA_07G091600, LOC100802646
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 233aa    MW: 24866.3 Da    PI: 8.9741
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G091600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26081.21.6e-254107199
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlrr+C+++C+++  +     p++q++++ +++k++G++ +l ll+++p + ++++++sl+yeA+ r+ +Pv G++g+++++++
  Glyma.07G091600.1.p   4 SCNGCRVLRRGCTTECPIRISLqwinsPNSQSNATLFLAKFYGRQGLLTLLTNAPSQLQQAVLKSLLYEACGRIVNPVLGSTGLLSTGNW 93 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelallke 99 
                          +l++++++++l ++
  Glyma.07G091600.1.p  94 HLCEAAVKAVLNGA 107
                          *****999887765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.663109IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-214102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MRLSCNGCRV LRRGCTTECP IRISLQWINS PNSQSNATLF LAKFYGRQGL LTLLTNAPSQ  60
LQQAVLKSLL YEACGRIVNP VLGSTGLLST GNWHLCEAAV KAVLNGAPIE QAPLDGATSL  120
QLKACNIRHV AKSDKSCGSD TLRKVKSRTT TFKRRAAKSR VESVVAELAE SELDGHGSMS  180
HDSGSGVTRM SENKIVGGEA DSDSVQSVGP ARADGEEMEL QLTLGWGPLK RQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.272540.0cotyledon| root| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G091600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340931.11e-170LBD domain-containing transcription factor
TrEMBLI1KIX11e-169I1KIX1_SOYBN; Uncharacterized protein
STRINGGLYMA07G10180.11e-170(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1818944
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.11e-57LOB domain-containing protein 42