PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G038200.1.p
Common NameGLYMA_07G038200, LOC100805489
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 580aa    MW: 63750.9 Da    PI: 6.8225
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G038200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.83.6e-15246305155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aaka++ a+ k++g
  Glyma.07G038200.1.p 246 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAAKAYDLAAIKYWG 305
                          78*******************655454478446*************************98 PP

2AP248.13e-15348399155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Glyma.07G038200.1.p 348 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 399
                          78****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-16246315IPR016177DNA-binding domain
PfamPF008471.6E-11246305IPR001471AP2/ERF domain
CDDcd000183.71E-21246315No hitNo description
Gene3DG3DSA:3.30.730.101.5E-15247314IPR001471AP2/ERF domain
PROSITE profilePS5103218.769247313IPR001471AP2/ERF domain
SMARTSM003802.1E-29247319IPR001471AP2/ERF domain
PRINTSPR003671.3E-6248259IPR001471AP2/ERF domain
PfamPF008475.9E-10348399IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18348409IPR016177DNA-binding domain
CDDcd000189.19E-25348409No hitNo description
Gene3DG3DSA:3.30.730.101.4E-18349407IPR001471AP2/ERF domain
PROSITE profilePS5103219.006349407IPR001471AP2/ERF domain
SMARTSM003803.6E-34349413IPR001471AP2/ERF domain
PRINTSPR003671.3E-6389409IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MSNWLGFSLT PHLRIDEEFE RENQERGAGG GGGYHHPSPS SHPHLSVMPL RSDGSLCVAD  60
SFSHSAASQE WRYDSAIGGG NSNEKGPKLE DFLGGYSNSP TKVFCQDTQH DQNQSQNNVS  120
KINVNVAPSF CTNAEIETGE SLANPYPHQS FHAYNDNSHA LIPTNGMYKS WLAQTQFSSD  180
GKPSTEANGC NFQSLSLSMS PGMQNGVGAI SSVQVSEDSR KRVMAKSHAR EPVPRKSIDT  240
FGQRTSQYRG VTRHRWTGRY EAHLWDNSCR KEGQTRKGRQ VYLGGYDKEE KAAKAYDLAA  300
IKYWGPTTHI NFPLSTYEKE LEEMKHMTRQ EFVANLRRKS SGFSRGASVY RGVTRHHQHG  360
RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGT SAVTNFDISR YDVKRICSSS  420
TLIAGDLAKR SPKESPALVP AEDFNSCGSS MPPASQPPPL AITDGEHSDE LSNMMWNANS  480
DVHAQNENGA NINNNVTESS SQQVSPSSNK DALNPQSPKC SVGLPNEFGV SGADYGHGYF  540
TLDGPKYDDG NNENDHMSTN RLGNLGLVNQ VPMFALWNE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.566260.0somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G038200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2359130.0AC235913.2 Glycine max clone GM_WBc0225O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006583159.10.0AP2-like ethylene-responsive transcription factor AIL1
RefseqXP_028239191.10.0AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-140AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A445JRV50.0A0A445JRV5_GLYSO; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLK7KZJ10.0K7KZJ1_SOYBN; Uncharacterized protein
STRINGGLYMA07G04265.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102743137
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-137AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]