PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G225200.1.p
Common NameGLYMA_06G225200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 352aa    MW: 40076.3 Da    PI: 7.2638
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G225200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.72.5e-1244100155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g
  Glyma.06G225200.1.p  44 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWG 100
                          57*******************99998898888888********************98 PP

2AP251.33e-16143194155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Glyma.06G225200.1.p 143 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 194
                          89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-844100IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-1544110IPR016177DNA-binding domain
SMARTSM003802.0E-2045114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-1345109IPR001471AP2/ERF domain
PROSITE profilePS5103218.82145108IPR001471AP2/ERF domain
PRINTSPR003673.9E-64657IPR001471AP2/ERF domain
PfamPF008475.5E-12143194IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-18143204IPR016177DNA-binding domain
CDDcd000187.14E-24143204No hitNo description
SMARTSM003801.2E-24144208IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17144203IPR001471AP2/ERF domain
PROSITE profilePS5103218.334144202IPR001471AP2/ERF domain
PRINTSPR003673.9E-6184204IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MAKQQTHEIN ASTNNNINTT KTVTTKVKRT RRSVPRNSPP QRSSIYRGVT RHRWTGRYEA  60
HLWDKNCWNE SQNKKGRQGA YDDEEAAAHA YDLAALKYWG QDTILNFPLS TYQNELKEME  120
GQSREEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTYATQEE  180
AATAYDMAAI EYRGLNAVTN FDLSRYIKWL KPNNNNNKVN SNNLIVSIPN CATNFTPNSN  240
QQQGFNFFNS QESFNNNEEA AMTQPRPAAA TSALGLLLQS SKFKEMMEMT SAIDLSTPPS  300
ESELPPCTFP DDIQTYFECE DSHRYGEGDD IMFSELNGFV PPMFHCDDFE A*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.294170.0root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G225200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351680.0AC235168.1 Glycine max strain Williams 82 clone GM_WBb0001B19, complete sequence.
GenBankAC2354160.0AC235416.1 Glycine max strain Williams 82 clone GM_WBb0132F05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025984526.10.0AP2-like ethylene-responsive transcription factor At1g16060
RefseqXP_028234292.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-113AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0B2QN700.0A0A0B2QN70_GLYSO; AP2-like ethylene-responsive transcription factor
TrEMBLK7KWP80.0K7KWP8_SOYBN; Uncharacterized protein
STRINGGLYMA06G30840.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.24e-89AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]