PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G213400.1.p
Common NameGLYMA_06G213400, LOC100809196
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 468aa    MW: 51601.6 Da    PI: 6.7937
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G213400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.36e-32254309156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Glyma.06G213400.1.p 254 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 309
                          68****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.355251311IPR017930Myb domain
SuperFamilySSF466895.38E-17251312IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-28252312IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-26254309IPR006447Myb domain, plants
PfamPF002498.2E-7256307IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MPSQAELSMM DYKPYSYSTL LKSFLDQTET DQTYKLEEFL SRLEEERVKI DAFKRELPLC  60
MQLLTNAVEA SRQQLQAFRS NQGTRPVLEE FMPILKHPNS QESAEKTSNI SDKANWMTSA  120
QLWSQASEGT KPQSTITSLP KEGADIGFSV SPKLALDNKH RNGGAFLPFS KERNSCQGLR  180
GLPELALASP EKEIEENKCE LEAEKCSKRE NPGKGGSCEG VNVDQGKSAS VASEAQTANT  240
TTTTTNTSGQ THRKARRCWS PDLHRRFVNA LQMLGGSQVA TPKQIRELMK VDGLTNDEVK  300
SHLQKYRLHT RRPSPSLHTG GPTPQLVVLG GIWVPPEYAT TTAAMTNSGD PTLYGPHPTS  360
QVAPPHYCAA TQMPQEFYNS ALPLSLLPPP HDYTLHHHHF HMYKTAAQTQ NSPESDIRSS  420
GDRSESIVDG KSESGKWNGE SGEKKGLAAL RDQEGEESTG SEITLKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-14254307154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-14254307154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-14254307154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-14254307154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed 3 days after germination, with a gradual decrease before the floral transition and remains at low levels afterward. {ECO:0000269|PubMed:25132385}.
UniprotTISSUE SPECIFICITY: Specifically expressed in vascular tissues of cotyledons, rosette leaves and cauline leaves. Not detected in the vegetative shoot apical meristem. {ECO:0000269|PubMed:25132385}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G213400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528276.10.0myb family transcription factor EFM
RefseqXP_028237464.10.0myb family transcription factor EFM-like
SwissprotQ9ZQ851e-122EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A0B2QW080.0A0A0B2QW08_GLYSO; Myb family transcription factor EFM
TrEMBLK7KWE50.0K7KWE5_SOYBN; Uncharacterized protein
STRINGGLYMA06G23902.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54663455
Representative plantOGRP43031624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-113G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]