PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G213100.1.p
Common NameGLYMA_06G213100, LOC100814551
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 506aa    MW: 56288.3 Da    PI: 4.8373
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G213100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.61.6e-1291244911374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlsel.aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                          lv++L++cA+ v+ gdl+ a +l+++++ l a  +    + ++a yf  AL++r+++  ++++++l++s+ +     e    ++ ++e++
  Glyma.06G213100.1.p 124 LVHTLMTCADSVQRGDLAFAGSLIENMQGLlAHVNTnIGIGKVAGYFIDALRRRILG--QGVFQTLSSSSYP----YEDNVLYHHYYEAC 207
                          689*************************995333332699****************9..9999999888887....566677889***** PP

                 GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                          P+lkf+h+taNqaIlea++g+++vH+iDf+++qGlQWpaL+qaLa Rp+gpp lR+Tg+g+p+s+++++l+e+g rLa++A++++v+f f
  Glyma.06G213100.1.p 208 PYLKFAHFTANQAILEAFNGHDCVHVIDFNLMQGLQWPALIQALALRPGGPPLLRLTGIGPPSSDNRDTLREIGLRLAELARSVNVRFAF 297
                          ****************************************************************************************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesv.sleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                          + ++a rled+++++L+v+p+Ea+aVn+++qlhrll+++  ++ s +++vL  ++sl+Pk++ vveqea+hn+ +Flerf+eal+yys++
  Glyma.06G213100.1.p 298 RGVAAWRLEDVKPWMLQVNPNEAVAVNSIMQLHRLLASDSdPIGSGIETVLGWIRSLNPKIISVVEQEANHNQDRFLERFTEALHYYSTV 387
                          **9888*****************************98655167779******************************************** PP

                 GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357
                          fdslea      e ++ + +++l+rei+nvv+ eg +r+erhe l+kWrerle+aGFkp++l+++a+kqa++ll  ++ +gy+vee++g+
  Glyma.06G213100.1.p 388 FDSLEAC---PVEPDKALAEMYLQREICNVVSSEGPARVERHEPLAKWRERLEKAGFKPLHLGSNAYKQASMLLTLFSAEGYSVEENQGC 474
                          ****999...467777888999******************************************************************** PP

                 GRAS 358 lvlgWkdrpLvsvSaWr 374
                          l+lgW++rpL+++SaW+
  Glyma.06G213100.1.p 475 LTLGWHSRPLIAASAWQ 491
                          ****************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011294.8E-131995No hitNo description
PfamPF120413.5E-301989IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098563.34398471IPR005202Transcription factor GRAS
PfamPF035145.5E-127124491IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MASSSSNGSS SGSKSWDIDG DLAGFGYKVR SSELQHVAEN MERLENVMDI VNSSTNNNIS  60
QLASDTVFYN PSDIGSWVDT LLSEFDQTAS LPYDFSDFLD LDTDQNQNHK PTLVTMEEDS  120
GIRLVHTLMT CADSVQRGDL AFAGSLIENM QGLLAHVNTN IGIGKVAGYF IDALRRRILG  180
QGVFQTLSSS SYPYEDNVLY HHYYEACPYL KFAHFTANQA ILEAFNGHDC VHVIDFNLMQ  240
GLQWPALIQA LALRPGGPPL LRLTGIGPPS SDNRDTLREI GLRLAELARS VNVRFAFRGV  300
AAWRLEDVKP WMLQVNPNEA VAVNSIMQLH RLLASDSDPI GSGIETVLGW IRSLNPKIIS  360
VVEQEANHNQ DRFLERFTEA LHYYSTVFDS LEACPVEPDK ALAEMYLQRE ICNVVSSEGP  420
ARVERHEPLA KWRERLEKAG FKPLHLGSNA YKQASMLLTL FSAEGYSVEE NQGCLTLGWH  480
SRPLIAASAW QAAPMQDRET LRFEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-521244914375GRAS family transcription factor containing p
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.254600.0seed coat| somatic embryo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528281.10.0PREDICTED: DELLA protein SLR1-like
SwissprotQ84TQ71e-162GAI_GOSHI; DELLA protein GAI
TrEMBLI1KD930.0I1KD93_SOYBN; Uncharacterized protein
STRINGGLYMA06G23940.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Representative plantOGRP12511550
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-139GRAS family protein