PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G199600.1.p
Common NameGLYMA_06G199600, LOC102667566
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 403aa    MW: 43990.8 Da    PI: 8.3789
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G199600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.33.7e-15193238555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn+ Er+RRdriN+++  L++l+P+a      K +Ka++L ++++Y+k+Lq
  Glyma.06G199600.1.p 193 HNQSERKRRDRINQKMKALQRLVPNA-----NKTDKASMLDEVINYLKQLQ 238
                          9************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.65E-16182242No hitNo description
SuperFamilySSF474591.57E-18186248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.168188237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-17193247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-12193238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-16194243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009704Biological Processde-etiolation
GO:0016607Cellular Componentnuclear speck
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MFPVSMSNYD RISELIWENG QLSIHGLGGL QPTNPTQEKP ISSGAHDTLE SIVQHATFQR  60
YQPSKFTREE GHAPTSNSKN NNSIGAPYYG GEVQGVLSST RKRTWSNANN SMLEECDILS  120
GCASAGATFC RDNDTTMMTW VSLDQSGRSL KTMEEDSACH CGSEIRDNQD DRDSKAEVGQ  180
SNSKRRSRTA AIHNQSERKR RDRINQKMKA LQRLVPNANK TDKASMLDEV INYLKQLQAQ  240
IQMMNMTSMP QMMVPLAMQQ QLQMSMLARM GVAGLGMGMG MNMAAAAQTA GGPIRSLPQF  300
IQPTTTTVCA PPPATAPVFV APSFMMPPSM IQAPPKPQQL PASSASIASI HLPHPYSAAG  360
LTQPINMDIL SNMAALYQQQ ISQNNHQALS SSMPQPHHEQ GR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183200KRRSRTAAIHNQSERKRR
2196201ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00571DAPTransfer from AT5G61270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006581990.10.0PREDICTED: transcription factor PIF7-like isoform X1
TrEMBLK7KW240.0K7KW24_SOYBN; Uncharacterized protein
STRINGGLYMA06G21495.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129992432
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61270.17e-39phytochrome-interacting factor7