PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G186800.1.p
Common NameGLYMA_06G186800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family E2F/DP
Protein Properties Length: 353aa    MW: 39836.7 Da    PI: 9.5989
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G186800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP76.23.3e-241277171
              E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                         rk+ksL+ll+++fl+l++k+  + v l+++a++L    v  +rRRiYDi+NVLe+++++++k+kn+++wkg
  Glyma.06G186800.1.p 12 RKQKSLGLLCTNFLSLYNKEGVRLVGLDDAASRL---GV--ERRRIYDIVNVLESVGVLTRKAKNQYTWKG 77
                         79*****************999************...**..****************************98 PP

2E2F_TDP77.11.8e-24148224171
              E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                          r+eksL lltq+f+kl+ +s+ ++++l+e+ak L+ + + ++k+RR+YDi+NVL+++nliek     ++k+++rw g
  Glyma.06G186800.1.p 148 RREKSLALLTQNFVKLFVCSNFEMISLDEAAKLLLGNaNNRTKVRRLYDIANVLSSMNLIEKthttnTRKPAFRWLG 224
                          689*******************************9999999************************999*******87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.3E-26878IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.58E-161175IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.6E-271277IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.9E-201377IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.1E-23144225IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.8E-28148224IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.2E-20150224IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467858.62E-13150225IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MTSLSTHHTY SRKQKSLGLL CTNFLSLYNK EGVRLVGLDD AASRLGVERR RIYDIVNVLE  60
SVGVLTRKAK NQYTWKGFCA IPAALQELKD EGLKENPGSF DDSNDNAKVS DDEEEEEETF  120
PNINIGSQSE KENPDYTATV KSSKNENRRE KSLALLTQNF VKLFVCSNFE MISLDEAAKL  180
LLGNANNRTK VRRLYDIANV LSSMNLIEKT HTTNTRKPAF RWLGVRGKTW GGSVDLAQNS  240
NVKESRKRMF GTDIGNISFK RNKVDLSMDG QNSKMQNQHE NISPRAQLEK IIIKKDAKQT  300
SESYQFGPFA PAYVPKVGTS ENNSVKKVHD WDSLAQEHRP QYQNQGFHSY KG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A5e-37112163228Transcription factor E2F8
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.15090.0cotyledon| flower| hypocotyl| root| stem| vegetative bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006581940.10.0PREDICTED: E2F transcription factor-like E2FE isoform X4
RefseqXP_006581939.10.0PREDICTED: E2F transcription factor-like E2FE isoform X3
SwissprotQ8LSZ41e-112E2FE_ARATH; E2F transcription factor-like E2FE
TrEMBLA0A0R0JIY70.0A0A0R0JIY7_SOYBN; Uncharacterized protein
STRINGGLYMA06G19843.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP24741634
FabidsOGEF36683366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.11e-114DP-E2F-like 1