PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G168600.1.p
Common NameGLYMA_06G168600, LOC102664649
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SBP
Protein Properties Length: 415aa    MW: 45336.4 Da    PI: 8.5122
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G168600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.27.3e-41109185278
                          -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          C v+gC++dls++++yhrrhkvCe hsk+p+v+++gl+qrfCqqCsrfh+l++fDe+krsCr+rL++hn+rrrk+q+
  Glyma.06G168600.1.p 109 CLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTIAGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQP 185
                          **************************************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.3E-32104170IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.658106183IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.14E-38107188IPR004333Transcription factor, SBP-box
PfamPF031103.9E-30109182IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MDWNLKAPSW DLVDHVDKAT TLQQNIGTKE EQNRFGVYRM KGEFSVDLKL GHHHVGNSGT  60
ESALANKSKD AAAASGAAAS AGVSKMASSP SGSSKRARTI SSTSLTVSCL VDGCNSDLSN  120
CRDYHRRHKV CELHSKTPEV TIAGLKQRFC QQCSRFHSLE QFDERKRSCR KRLDGHNRRR  180
RKPQPEPLSR PGSFLSNYQG TQLLPFSGPH VYASTAMVSP DWSGALVTSS ADARLHNHNH  240
HHHQQDLFLG SSHKEGKQVA FLHSNHHPST LSNQNPPPFP SPSICHTLLR TRPLSETCGG  300
GARSKMFCES LTTTTTASNN NNNSLHDTIP CALSLLSSSQ THTPGGNGLN QMVQQPPPPS  360
MSLMMQPLGL SLQDNNNNSL ESVDHCSSIY SLASDHHGSH CNEAAPQLFP FQWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-281091821184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164181RKRSCRKRLDGHNRRRRK
2164182RKRSCRKRLDGHNRRRRKP
3165182KRSCRKRLDGHNRRRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G168600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150359e-72AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006581859.10.0squamosa promoter-binding-like protein 13A isoform X1
RefseqXP_014631998.10.0squamosa promoter-binding-like protein 13A isoform X1
TrEMBLK7KVJ30.0K7KVJ3_SOYBN; Uncharacterized protein
STRINGGLYMA06G17700.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.12e-59SBP family protein