PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G165000.1.p
Common NameGLYMA_06G165000, ICE4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 463aa    MW: 51323.7 Da    PI: 6.6578
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G165000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.1e-11278320754
                          HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Glyma.06G165000.1.p 278 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 320
                          79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.764271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-16274339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-9277320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-16278333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.32E-12278324No hitNo description
CDDcd048739.73E-6391451No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MMSRINNNGV AWMGEREDEN SRNHNIIPTD TTTTNTGFVE TTNNDLGSLC AFKPMLDVDD  60
EWYNNITNHH HHHHHHHDMT FDPDNLLLHA ATAVDSSSSC SPYFFPPNPK PPFLVNPFDM  120
GFLDPQASSS PSLPLLPEST HFTPPHTTTT AFAGFQSRLQ ESGSSKSLFL RPLESLPPSG  180
AQPTLFQKRA ALRKNMEGSD NNKKKRKEKE KDEEVEDLSF DGSGLNYDSD DLTESNYNNV  240
SEGNTGKNGG VSSNANSTVI TGLDQKGKKK GMPAKNLMAE RRRRKKLNDR LYMLRSVVPK  300
ISKMDRASIL GDAIEYLKEL LQRINDLHNE LESTPVGSSL TPVSSFHPLT PTPPTLPSRI  360
KEELCPSSLP SPNGQPARVE VRLREGRAVN IHMFCARKPS LLLSTMRALD NLGLDIQQAV  420
ISCFNGFAMD IFRAEQCKEG QDVHPEQIKA VLLDSAGYNG MM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267285KKKGMPAKNLMAERRRRKK
2279286ERRRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.77580.0cotyledon| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3932260.0FJ393226.1 Glycine max inducer of CBF expression 4 (ICE4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001238707.10.0inducer of CBF expression 4
SwissprotQ9LSE21e-128ICE1_ARATH; Transcription factor ICE1
TrEMBLB8XJY80.0B8XJY8_SOYBN; Inducer of CBF expression 4
STRINGGLYMA06G17330.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-119bHLH family protein