PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G040800.1.p
Common NameGLYMA_06G040800, LOC100788158
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 259aa    MW: 29397.3 Da    PI: 7.1796
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G040800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-08162202954
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Glyma.06G040800.1.p 162 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 202
                          699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-14154218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-14157212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-6163202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.20E-6176207No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEQQHMDMMT MMMLQHLPEF SEPYTHTMEG FHPPSEEFCG NNNNNIRNTM QLADLIDNNN  60
PLSPIPWSSS YSFTHLPAST TEISFSNNSH PTTPIMLQEH EQQYEGANAN PYGGEKRNSM  120
AAMREMIFRM AAMQPIHIDP ESVKAPKRRN VKISKDPQSV AARHRRERIS ERIRILQRLV  180
PGGTKMDTAS MLDEAIHYVK FLKTQVQSLE RASSANNNIR PLNAAGQIGF PVASTPYFPL  240
PSKPYQAPNM DNMHDTYH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.106151e-179cotyledon| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3369550.0DQ336955.1 Glycine max cultivar Williams 82 clone BAC gmw1-52d3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527719.10.0PREDICTED: transcription factor HEC2
TrEMBLQ00M670.0Q00M67_SOYBN; Bhelix-loop-helix transcription factor
STRINGGLYMA06G04380.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7611568
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.12e-41bHLH family protein
Publications ? help Back to Top
  1. Schlueter JA,Scheffler BE,Schlueter SD,Shoemaker RC
    Sequence conservation of homeologous bacterial artificial chromosomes and transcription of homeologous genes in soybean (Glycine max L. Merr.).
    Genetics, 2006. 174(2): p. 1017-28
    [PMID:16888343]