PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G038900.1.p
Common NameGLYMA_06G038900, LOC100794327
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 233aa    MW: 26278.3 Da    PI: 9.6889
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G038900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.34.9e-17132221198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k +++s+v+   +l lp +f++++  k  ++  +tl de+g +++  +    ++ +  l++GW++F+ a++L +gD ++F+l++r++f
  Glyma.06G038900.1.p 132 FIKSMLQSHVSGGFWLGLPVHFCKSNLPK--KDEVVTLIDEDGTEYSTIY--LAGKTG--LSGGWRGFAIAHDLADGDALIFQLIKRTTF 215
                          89*********************999533..4458***************..555544..*************************98888 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                            +v ++r
  Glyma.06G038900.1.p 216 --KVYIVR 221
                          ..888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.44E-24126221IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.7E-21126222IPR015300DNA-binding pseudobarrel domain
CDDcd100173.06E-27130221No hitNo description
PfamPF023626.7E-15132221IPR003340B3 DNA binding domain
SMARTSM010191.4E-23132223IPR003340B3 DNA binding domain
PROSITE profilePS5086312.562132223IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MVAAIAYEES RRKRVEENKK RMEALNLPLL SQALQKSSPS PKSSPLKQVK HRAIQKEVVV  60
VRRSSRVANL PSPVYKEIVI DRVTMPRRSL CRSYDKYRDY ANRVYASDEA REEALEKAEK  120
LMSGLESEYP AFIKSMLQSH VSGGFWLGLP VHFCKSNLPK KDEVVTLIDE DGTEYSTIYL  180
AGKTGLSGGW RGFAIAHDLA DGDALIFQLI KRTTFKVYIV RAICPPDDKQ LE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G038900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528263.11e-172B3 domain-containing protein At5g42700
RefseqXP_006581238.11e-172B3 domain-containing protein At5g42700
RefseqXP_028234881.11e-172B3 domain-containing protein At5g42700-like
RefseqXP_028234882.11e-172B3 domain-containing protein At5g42700-like
RefseqXP_028234883.11e-172B3 domain-containing protein At5g42700-like
SwissprotQ69V368e-75Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A445K4C11e-171A0A445K4C1_GLYSO; B3 domain-containing protein isoform A
TrEMBLK7KSY21e-171K7KSY2_SOYBN; Uncharacterized protein
STRINGGLYMA06G04200.31e-171(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.15e-61B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]