PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G033300.1.p
Common NameGLYMA_06G033300, LOC100818095
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 470aa    MW: 50062.4 Da    PI: 9.113
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G033300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-055880123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C+k F r  nL+ H r H
  Glyma.06G033300.1.p 58 FVCEICNKGFQRDQNLQLHRRGH 80
                         89*******************88 PP

2zf-C2H213.60.0002134156123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ C+k +  +s+ k H++t+
  Glyma.06G033300.1.p 134 WQCERCSKKYAVHSDWKAHMKTC 156
                          58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.21E-75780No hitNo description
Gene3DG3DSA:3.30.160.601.5E-55780IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121717.4E-55880IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9495880IPR007087Zinc finger, C2H2
SMARTSM003550.0175880IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
SMARTSM0035522099129IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-4122155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.21E-7129155No hitNo description
SMARTSM0035584134154IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MTEPQNPSPL THSPALEIAP QTQPLPPPKK KRNLPGMPDP DAEVIALSPK TLLATNRFVC  60
EICNKGFQRD QNLQLHRRGH NLPWKLRQRG SKEPQKKAYV CPEPSCVHHN PARALGDLTG  120
IKKHFCRKHG EKKWQCERCS KKYAVHSDWK AHMKTCGTRE YRCDCGTLFS RRDSFITHRA  180
FCDVLAQESA RAQDQAQGGS SNSYVVVVSS SPPTPPLTPS ASVVSPTLSI QSSEIPENPS  240
TKVSPTSPNA SCFVTSSSST PSSTTSVFAS VLAPSTTPTT PSQSPSNSTC SFSNLMSNLA  300
RSENSNALMR EPTSLSLSTP PYHSNNDPLH YTALPQPALS ATALLQKAAQ MGASNASLLR  360
GLGLARTSSS FGKDEGVNIN ATTTLQWNGQ VKQENHPVVD NLGLGLPCGS GSVPDVMMGP  420
TTPFVGQPMT RDLLGLSVGG GATSRGGLSA LLTSFGGNFD SPSEGGVHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-33130191364Zinc finger protein JACKDAW
5b3h_F3e-33130191364Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.206510.0somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269|PubMed:21571950}.
UniprotTISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269|PubMed:21571950}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G033300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-141AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527695.10.0protein indeterminate-domain 2
RefseqXP_028234811.10.0zinc finger protein GAI-ASSOCIATED FACTOR 1-like
SwissprotQ9LVQ71e-128IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A445K4200.0A0A445K420_GLYSO; Protein indeterminate-domain 1 isoform B
STRINGGLYMA06G03630.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-118indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]