PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G028300.1.p
Common NameGLYMA_06G028300, LOC100797850
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 250aa    MW: 27269.5 Da    PI: 4.9044
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G028300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-183988255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          ykGVr++  +g+WvAeIr+p   + r +r +lg+f t  eAa a++aa++kl+g
  Glyma.06G028300.1.p 39 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFETSHEAALAYDAAARKLYG 88
                         69****999.**********8...3.35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.25E-223898No hitNo description
Gene3DG3DSA:3.30.730.102.2E-303997IPR001471AP2/ERF domain
PfamPF008471.4E-133988IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-213996IPR016177DNA-binding domain
SMARTSM003807.0E-3639102IPR001471AP2/ERF domain
PROSITE profilePS5103222.4313996IPR001471AP2/ERF domain
PRINTSPR003671.2E-94051IPR001471AP2/ERF domain
PRINTSPR003671.2E-96278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MLKSGMGIEE RKQVKKPAQA SSRKGCMRGK GGPENASCTY KGVRQRTWGK WVAEIREPNR  60
GARLWLGTFE TSHEAALAYD AAARKLYGSD AKLNLPELSI KSQSQCPPPP SSVSNNTQIP  120
QMENLQQQIQ NNYMDMATCS NNFNNNTNNP SEVSMASQQV GVGVPIYTSD SIVSLPLDTN  180
PKPVENDGDF RPSWGTMNEG LPVFDDSIWA EAAMSLDFPQ IAAETAIYSS GNNLADVGVW  240
DSLQTPWCM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-194096360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G028300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150354e-88AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527879.10.0dehydration-responsive element-binding protein 2D
RefseqXP_028234745.10.0dehydration-responsive element-binding protein 2D-like
TrEMBLA0A0R4J3F80.0A0A0R4J3F8_SOYBN; Uncharacterized protein
STRINGGLYMA06G03110.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.14e-42ERF family protein