PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G024900.3.p
Common NameGLYMA_06G024900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family E2F/DP
Protein Properties Length: 340aa    MW: 38363.9 Da    PI: 4.6773
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G024900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP84.21e-2670135171
              E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          r+++sL+llt+kf++l++ +++g+++ln  a+ L   +v  ++RRiYDi+NVLe+++liek++kn+i+wkg
  Glyma.06G024900.3.p  70 RYDSSLGLLTKKFVSLIQDAKDGTLDLNRTAEIL---EV--QKRRIYDITNVLEGVGLIEKTSKNHIQWKG 135
                          6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.0E-2967136IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.1E-3570135IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467859.07E-1870133IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023195.4E-2572135IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440741.36E-26146253No hitNo description
CDDcd146607.38E-35146253No hitNo description
PfamPF164219.5E-26151250IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MSQRYDNNVF KSHINNIQLA PGITETLHLP PPLQTEPTIR GKQNGKSKGP RNAKSANADS  60
PNSTAVNNCR YDSSLGLLTK KFVSLIQDAK DGTLDLNRTA EILEVQKRRI YDITNVLEGV  120
GLIEKTSKNH IQWKGCDGLG PQELEDQVNS LKAEVDSLYA EESELDDCIR KKQELLRNLE  180
ESESSQKYLF LTKEDILSLP CFQNQEIIAI KAPKASCIEV PDPDEELGFR QRQYKMIVRS  240
AIGPINLYLL SKDDSKFEDD SAKRMKLMDP SWNSDPIRKR GVGLLESQHD EKNPSEHFSL  300
QGSQAFGIQE ITPTDFEMED DYWFQSDPGV SQTELWGNE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A1e-2569136674PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00190DAPTransfer from AT1G47870Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0970030.0BT097003.1 Soybean clone JCVI-FLGm-15J6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006581173.10.0PREDICTED: transcription factor E2FC-like isoform X1
SwissprotQ9FV707e-93E2FC_ARATH; Transcription factor E2FC
TrEMBLA0A0R0JKL10.0A0A0R0JKL1_SOYBN; Uncharacterized protein
TrEMBLK7KSN50.0K7KSN5_SOYBN; Uncharacterized protein
STRINGGLYMA06G02738.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.26e-92E2F/DP family protein