PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G024900.1.p
Common NameGLYMA_06G024900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family E2F/DP
Protein Properties Length: 427aa    MW: 48197.6 Da    PI: 5.9776
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G024900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP83.71.4e-26157222171
              E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          r+++sL+llt+kf++l++ +++g+++ln  a+ L   +v  ++RRiYDi+NVLe+++liek++kn+i+wkg
  Glyma.06G024900.1.p 157 RYDSSLGLLTKKFVSLIQDAKDGTLDLNRTAEIL---EV--QKRRIYDITNVLEGVGLIEKTSKNHIQWKG 222
                          6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-28154223IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.04E-17157220IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.1E-35157222IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023197.7E-25159222IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146602.44E-35233340No hitNo description
SuperFamilySSF1440742.09E-26233340No hitNo description
PfamPF164211.4E-25238337IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MVYVREAQKG AQKVRPKRKR KGRGGVCIRT ELTAFFALVL AATPYQTFTF TSLFSFLLLY  60
ITVLLFHTQT LSLVSSISLQ IHSPFPNMSQ RYDNNVFKSH INNIQLAPGI TETLHLPPPL  120
QTEPTIRGKQ NGKSKGPRNA KSANADSPNS TAVNNCRYDS SLGLLTKKFV SLIQDAKDGT  180
LDLNRTAEIL EVQKRRIYDI TNVLEGVGLI EKTSKNHIQW KGCDGLGPQE LEDQVNSLKA  240
EVDSLYAEES ELDDCIRKKQ ELLRNLEESE SSQKYLFLTK EDILSLPCFQ NQEIIAIKAP  300
KASCIEVPDP DEELGFRQRQ YKMIVRSAIG PINLYLLSKD DSKFEDDSAK RMKLMDPSWN  360
SDPIRKRGVG LLESQHDEKN PSEHFSLQGS QAFGIQEITP TDFEMEDDYW FQSDPGVSQT  420
ELWGNE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A4e-25156223674PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00190DAPTransfer from AT1G47870Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0970030.0BT097003.1 Soybean clone JCVI-FLGm-15J6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006581173.10.0PREDICTED: transcription factor E2FC-like isoform X1
SwissprotQ9FV705e-92E2FC_ARATH; Transcription factor E2FC
TrEMBLK7KSN50.0K7KSN5_SOYBN; Uncharacterized protein
STRINGGLYMA06G02738.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12251749
FabidsOGEF118852529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.28e-91E2F/DP family protein