PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G200900.1.p
Common NameGLYMA_05G200900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 484aa    MW: 52627.1 Da    PI: 6.6995
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G200900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.5e-11300342754
                          HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          ++ErrRR+++N+++  Lr+++P+ +      K++ a+iL  A+eY+k+L
  Glyma.05G200900.1.p 300 MAERRRRKKLNDRLYMLRSVVPNiS------KMDRASILGDAIEYLKEL 342
                          79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.923293342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-17297362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-14299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-9299342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-16300355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.28E-13300347No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MMSGWMQDTA EEQNSASASW PNSNANNELS CVSLCAYKPI SSQIHEAEWR HVPNNITHTN  60
VAASDNYNLL QQPLHPTNLN FLTPKPTFYP LEMSSDVGFL DPQASFTSKT DGDVFLSSNN  120
NLLTLPNMSS SMCVVSPQPQ QQGSVVGFSG FKNIMGSDHD HVVEGSRKAL LLSCRSSILR  180
PLESLPPSGS QPTLFQKRAA LRKNLAVADD NCKGKKSEVL IDSKKRGTCN NVGEGVEGGS  240
FDGSGLNNYD SDEISDDNNK MEEISARNGG NSSKANSTVT GSGVDQKGKK KTGIPAKNLM  300
AERRRRKKLN DRLYMLRSVV PNISKMDRAS ILGDAIEYLK ELLQRISELH NELESTPAGG  360
SSSFLHHPLT PTTLPARMQE ELCLSSLPSP NGHPANARVE VGLREGRGVN IHMFCDRKPG  420
LLLSTMTALD NLGLDIQQAV ISYVNGFAMD IFRAEQRNEG QDVHPEQIKA VLLDSAAGFH  480
SMS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1288307KKKTGIPAKNLMAERRRRKK
2301308ERRRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.379540.0hypocotyl
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3932250.0FJ393225.1 Glycine max inducer of CBF expression 3 (ICE3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006579339.10.0PREDICTED: inducer of CBF expression 3 isoform X1
SwissprotQ9LSE21e-103ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0B2QBN90.0A0A0B2QBN9_GLYSO; Transcription factor ICE1
TrEMBLK7KS780.0K7KS78_SOYBN; Uncharacterized protein
STRINGGLYMA05G38530.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-102bHLH family protein