PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G179900.1.p
Common NameGLYMA_05G179900, LOC100797648
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 313aa    MW: 34944.1 Da    PI: 5.0948
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G179900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.13.3e-21116166256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  Glyma.05G179900.1.p 116 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDNAAFKLRGE 166
                          59******9.**********965...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.89E-35115175No hitNo description
Gene3DG3DSA:3.30.730.101.8E-32116174IPR001471AP2/ERF domain
SMARTSM003801.5E-39116179IPR001471AP2/ERF domain
PROSITE profilePS5103223.235116173IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-24116174IPR016177DNA-binding domain
PRINTSPR003672.8E-11117128IPR001471AP2/ERF domain
PfamPF008478.6E-15117166IPR001471AP2/ERF domain
PRINTSPR003672.8E-11139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGTAIGMYSN NNIVPDFLDP YSEELMKALM PFMKSDYFSA SSSSSSRESH PSPLIPSNSL  60
PSSNQIRLNQ LTQDQILQIQ AQIHIQQQHV AQGQAHLGPK RVPMKHAGTA AKAAKLYRGV  120
RQRHWGKWVA EIRLPKNRTR LWLGTFDTAE EAALAYDNAA FKLRGEFARL NFPHLRHHGA  180
FVFGEFGDYR PLPSSVDSKL QAICESLAKQ EEKPCCSVED VKPVIHAAEL AEVESDVAKL  240
NAEYVYPEFE DFKVENENPM LSSSVSGESS SPESGVTFLD FSDFSDSNNQ WDEMENFGLE  300
KFPSVEIDWA AI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21115173160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.583710.0seed coat
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G179900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2966510.0AY296651.1 Glycine max DREB2 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525060.10.0ethylene-responsive transcription factor ERF060
SwissprotO656655e-79ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLI1K4K50.0I1K4K5_SOYBN; Uncharacterized protein
STRINGGLYMA05G31370.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.19e-56ERF family protein