PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G137000.1.p
Common NameGLYMA_05G137000, LOC100806138
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 441aa    MW: 48848.7 Da    PI: 8.3522
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G137000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65.1e-066183123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C++C++ F r  nL+ H r+H
  Glyma.05G137000.1.p 61 YVCEICNQGFQRDQNLQMHRRRH 83
                         9*********************9 PP

2zf-C2H216.42.6e-05140162123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C +C+k +  +s++k Hi+t+
  Glyma.05G137000.1.p 140 WVCDKCSKGYAVQSDYKAHIKTC 162
                          58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-56083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.87E-56083No hitNo description
PROSITE profilePS5015710.976183IPR007087Zinc finger, C2H2
SMARTSM003550.00526183IPR015880Zinc finger, C2H2-like
PROSITE patternPS01359063145IPR019786Zinc finger, PHD-type, conserved site
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM00355210104134IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.5E-4131161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.87E-5135160No hitNo description
SMARTSM0035562140167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MLDNNNSASN SGAPSSSDAA FALSENGVAN NKRKRRPAGT PDPDAEVVSL SPTTLLESDR  60
YVCEICNQGF QRDQNLQMHR RRHKVPWKLL KRETAQGQNK KRVFVCPEPS CLHHDPCHAL  120
GDLVGIKKHF RRKHSNHKQW VCDKCSKGYA VQSDYKAHIK TCGTRGHSCD CGRVFSRVES  180
FIEHQDACTV RQHRPELQAL QAACSSRTAS SASPSSEANF SIAPPLQGLP VLPKPAEQPA  240
TAVLLMSEIH NNKSTTSHNL ELQLLPSSIN SQEKHNPKEN YGLKLSIGSC RNDTGNNEPA  300
ERACSEAHRS PPERNNNNVS DYSTLEVARL KEFAGEELKL AMAEKAYAEE ARREAKRQIE  360
IAEHEFENAK RIRKQAQAEL AKAEELRKQA IKKISSTVKE ITCHTCKQQF QSSIVGVPSS  420
EETSIVMSYM SSATTEGEAE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-17138188555Zinc finger protein JACKDAW
5b3h_F1e-17138188555Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.434040.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression levels gradually decrease with aging in both the shoot and root vasculature. {ECO:0000269|PubMed:16813575}.
UniprotTISSUE SPECIFICITY: Mainly expressed in the endodermis, the gravity-sensing tissue in inflorescence stems. Mostly present in stems and flowers, and, to a lower extent, in seedlings, hypocotyls, roots and the shoot apical meristem (SAM). {ECO:0000269|PubMed:16813575}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G137000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006580086.10.0protein SHOOT GRAVITROPISM 5 isoform X1
RefseqXP_028232544.10.0zinc finger protein SHOOT GRAVITROPISM 5-like isoform X1
SwissprotF4IPE31e-159IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A445KN290.0A0A445KN29_GLYSO; Protein SHOOT GRAVITROPISM 5 isoform A
TrEMBLK7KQ350.0K7KQ35_SOYBN; Uncharacterized protein
STRINGGLYMA05G26780.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17693289
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-128indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAO╬ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]