PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G120500.1.p
Common NameGLYMA_05G120500, LOC100813096
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 190aa    MW: 21956.4 Da    PI: 4.5356
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G120500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1163.9e-3681271128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrF Ptdeelvv++L++k++  +++  +vi+++++y ++Pw+L+ ++ ae k+wy++s+r         +nr+t +gyW   g ++
  Glyma.05G120500.1.p   8 LPPGFRFYPTDEELVVHFLQRKANLLPCHP-DVIPDLELYPYDPWELHGRALAEGKQWYYYSRRT--------QNRVTGNGYWMPMGMEE 88 
                          79*************************999.99**************97777889*******984........58*************** PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +v+s+ +++ vg+kk  vf+ g+ap+g+ t+W+m+eyrl
  Glyma.05G120500.1.p  89 PVVSSsSNKRVGMKKYYVFHLGEAPDGNTTNWIMQEYRL 127
                          ***9867778***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-485158IPR003441NAC domain
PROSITE profilePS5100544.9838158IPR003441NAC domain
PfamPF023654.0E-229127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MGDNNVNLPP GFRFYPTDEE LVVHFLQRKA NLLPCHPDVI PDLELYPYDP WELHGRALAE  60
GKQWYYYSRR TQNRVTGNGY WMPMGMEEPV VSSSSNKRVG MKKYYVFHLG EAPDGNTTNW  120
IMQEYRLLDS DSSSRSSKRR SQPKPDHNKW VICQVYEQDN DDDGDGTELS CLDEVFLSLD  180
DLEEISLPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-40416013167NO APICAL MERISTEM PROTEIN
1ut4_B4e-40416013167NO APICAL MERISTEM PROTEIN
1ut7_A4e-40416013167NO APICAL MERISTEM PROTEIN
1ut7_B4e-40416013167NO APICAL MERISTEM PROTEIN
3swm_A4e-40416016170NAC domain-containing protein 19
3swm_B4e-40416016170NAC domain-containing protein 19
3swm_C4e-40416016170NAC domain-containing protein 19
3swm_D4e-40416016170NAC domain-containing protein 19
3swp_A4e-40416016170NAC domain-containing protein 19
3swp_B4e-40416016170NAC domain-containing protein 19
3swp_C4e-40416016170NAC domain-containing protein 19
3swp_D4e-40416016170NAC domain-containing protein 19
4dul_A4e-40416013167NAC domain-containing protein 19
4dul_B4e-40416013167NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G120500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6619181e-120EU661918.1 Glycine max NAC domain protein (NAC18) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524754.11e-140NAC domain-containing protein 104
RefseqXP_028232345.11e-140NAC domain-containing protein 104-like
SwissprotQ8GWK63e-84NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A0B2R8L11e-139A0A0B2R8L1_GLYSO; NAC domain-containing protein 104
TrEMBLI1K2S01e-139I1K2S0_SOYBN; Uncharacterized protein
STRINGGLYMA05G24910.11e-140(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Representative plantOGRP45101024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.18e-84xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]