PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G105600.1.p
Common NameGLYMA_05G105600, LOC100778524
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 500aa    MW: 56785.1 Da    PI: 5.1425
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G105600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS345.87.1e-1061254983374
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lLle A+av++++ ++ ++lL+ l+el+sp+gd+ q+laayf++AL +r+++ ++++y +l++ ++++ + +++ + +  f+evsP+ +
  Glyma.05G105600.1.p 125 NLLLESARAVADNNSTRLHHLLWMLNELSSPYGDTDQKLAAYFLQALFSRVTEAGDRTYGTLASASEKTCSFESTRKTVLKFQEVSPWTT 214
                          79**********************************************************998877775554444455555********* PP

                 GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                          f+h++ N aIlea+eg+ ++Hi+D++ ++++QWp+Ll+aLa+R++++p+lR+T+v+  +++   ++ ++e+g r++kfA+ +gvpf+fnv
  Glyma.05G105600.1.p 215 FGHVASNGAILEALEGNPKLHILDISNTYCTQWPTLLEALATRSDETPHLRLTTVVTGRTSnsVQRVMKEIGTRMEKFARLMGVPFKFNV 304
                          ******************************************************9987766778999*********************** PP

                 GRAS 181 lvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyys 265
                          +++  +l++++++eL++k++EalaVn+v +lh++     ++ ++rd++++ ++ l+P++v+vve+ead++ +    +F+++f e+l+++ 
  Glyma.05G105600.1.p 305 IHHYgDLSEFNFNELDIKEDEALAVNCVNRLHSVS----AVGNNRDALISSLQALQPRIVTVVEEEADLDVGidgyEFVKGFEECLRWFR 390
                          97767*****************************8....6677799********************8875545555************** PP

                 GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.ee 354
                          + fd+l++++ ++s+er ++Er+  gr++v++vac++ae++er+et+++W +rl++ G+k++p+se++ +++++llr++  +g+++  ++
  Glyma.05G105600.1.p 391 VYFDALDESFVKTSNERLMLERA-AGRAVVDLVACSTAESVERRETAARWVARLHNGGLKAAPFSEEVCDDVRALLRRYR-EGWSMAaCS 478
                          ***********************.********************************************************.776666388 PP

                 GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                          ++ ++l Wkd p+v++SaWr
  Glyma.05G105600.1.p 479 DAGIFLSWKDTPVVWASAWR 498
                          88999**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.80997478IPR005202Transcription factor GRAS
PfamPF035142.4E-103125498IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009956Biological Processradial pattern formation
GO:0045930Biological Processnegative regulation of mitotic cell cycle
GO:0048366Biological Processleaf development
GO:0055072Biological Processiron ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MDTLFRLVSF HQQQQPDPSL NSTTSRTSSS SRSSRQNYYP YSSYQEEEEC FNFYMDEEDL  60
SSSSSKYYYP YQPHHQQQQQ QQHNVSNIST NTFSTTPNTD YSYSFSPTPQ VQDFNFEFSP  120
NWSHNLLLES ARAVADNNST RLHHLLWMLN ELSSPYGDTD QKLAAYFLQA LFSRVTEAGD  180
RTYGTLASAS EKTCSFESTR KTVLKFQEVS PWTTFGHVAS NGAILEALEG NPKLHILDIS  240
NTYCTQWPTL LEALATRSDE TPHLRLTTVV TGRTSNSVQR VMKEIGTRME KFARLMGVPF  300
KFNVIHHYGD LSEFNFNELD IKEDEALAVN CVNRLHSVSA VGNNRDALIS SLQALQPRIV  360
TVVEEEADLD VGIDGYEFVK GFEECLRWFR VYFDALDESF VKTSNERLML ERAAGRAVVD  420
LVACSTAESV ERRETAARWV ARLHNGGLKA APFSEEVCDD VRALLRRYRE GWSMAACSDA  480
GIFLSWKDTP VVWASAWRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-3115749837375GRAS family transcription factor containing p
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.627260.0somatic embryo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524693.10.0PREDICTED: protein SHORT-ROOT-like
SwissprotQ9SZF70.0SHR_ARATH; Protein SHORT-ROOT
TrEMBLK7KPG80.0K7KPG8_SOYBN; Uncharacterized protein
STRINGGLYMA05G22460.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27551332
FabidsOGEF129734106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.10.0GRAS family protein