PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G103300.1.p
Common NameGLYMA_05G103300, LOC100816480
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 228aa    MW: 24790.2 Da    PI: 8.5852
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G103300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.56.7e-312103197
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C+++C+l+p++     +++q +++ +v+k+FG++ ++++++++pe++r+++++sl++eA+ r+ +Pv+Gavg+++++++
  Glyma.05G103300.1.p   2 SCNGCRVLRKGCSESCMLRPCLqwietAQAQGHATVFVAKFFGRAGLMSFISNVPENQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNW 91 
                          6*********************9998777889********************************************************** PP

               DUF260  86 qleqlkaelall 97 
                          +++q+++e++l+
  Glyma.05G103300.1.p  92 HVCQAAVETVLR 103
                          ******999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.8731107IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCMLR PCLQWIETAQ AQGHATVFVA KFFGRAGLMS FISNVPENQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPM PELMGLDAPA  120
AAATDEASEA EVACTDTWRI RNPNPNCRFT SSRSSGCGGG GKRKRSEELA KLQAQPNLDL  180
RLTPVFSQKV ESRRPESPSM TSVESGTTTE NRFGDQWGHR KVLNLFI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.500710.0root| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G103300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-60AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340916.11e-168LBD domain-containing transcription factor
RefseqXP_028232171.11e-168LOB domain-containing protein 38-like
SwissprotQ9SZE82e-83LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A445KM981e-166A0A445KM98_GLYSO; LOB domain-containing protein 39
TrEMBLI1K2B81e-166I1K2B8_SOYBN; Uncharacterized protein
STRINGGLYMA05G22120.11e-167(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.18e-80LOB domain-containing protein 38