PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G031800.1.p
Common NameGLYMA_05G031800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 225aa    MW: 24692 Da    PI: 9.5035
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G031800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.3e-09109156455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Glyma.05G031800.1.p 109 NHSLAERARREKISERMKILQDLVPGC----NKVIGKAFVLDEIINYVQSLQ 156
                          79************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-17103173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.09E-9103160No hitNo description
PROSITE profilePS5088815.135105155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-17105175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-7109156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-9111161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MEPLLFNDST FSSANPSLSE IWPSHFPSDH TPRKRRLSPS SDSASNKHIK LSAPESQDQN  60
GALKVGEVDA TSVAGNKLPQ QTPKPSSSEQ APKQDYIHVR ARRGQATDNH SLAERARREK  120
ISERMKILQD LVPGCNKVIG KAFVLDEIIN YVQSLQRQVE FLSMKLEAVS SRLSMKPTLE  180
CFPSKEVCTQ AGIIFGSQPA KGYAQGSQMG WLHMQIAGGF EKAT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.255140.0cotyledon| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0976470.0BT097647.1 Soybean clone JCVI-FLGm-22I4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001242485.11e-166uncharacterized protein LOC100809878
SwissprotQ9LV172e-59BH079_ARATH; Transcription factor bHLH79
TrEMBLA0A0B2SPS81e-168A0A0B2SPS8_GLYSO; Transcription factor bHLH79
TrEMBLI1JZU41e-168I1JZU4_SOYBN; Uncharacterized protein
STRINGGLYMA05G01590.11e-167(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.19e-66BIG PETAL P