PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G013300.1.p
Common NameGLYMA_05G013300, LOC100803669
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 377aa    MW: 42497.3 Da    PI: 7.11
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G013300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP139.82.1e-431192653135
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssasec....eaessss 80 
                           k+drhski T++g+RdRR+Rls+e+a+rfF Lqd+LGfdk+skt++WLl+qak +ik+l +         s+ss sec    + ++ ++
  Glyma.05G013300.1.p 119 SKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVDWLLNQAKGEIKQLGREktsvggakSASSTSECegvsSLDEVVV 208
                          69*************************************************************999997765555577755542222233 PP

                  TCP  81 sas.nsssgkaaksaa.kskksqksaasalnlakesrakarararertrekmriknk 135
                          s++ n++++++   ++  + ++  ++++++ ++kesr+kar+rarertrekmr++ +
  Glyma.05G013300.1.p 209 SGGvNEEQERETVPNMkRRTNKVCRKSAFNPIDKESREKARERARERTREKMRTRRV 265
                          3333333334444444234444444455566777*******************9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.7E-44119262IPR005333Transcription factor, TCP
PROSITE profilePS5136933.358120178IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.072242259IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MYSSNTSLNG NELISYPNQP FCFRPFSFES NPTNSSKEET NSNYALPLPP PPPLLSFFQS  60
PFDENIFQEH HHDFLLLHHS LADSGVLTKN LDVAAEISPI PCPGEGSIAM EHTPRKRSSK  120
RDRHSKINTA RGLRDRRMRL SLEVAKRFFG LQDMLGFDKA SKTVDWLLNQ AKGEIKQLGR  180
EKTSVGGAKS ASSTSECEGV SSLDEVVVSG GVNEEQERET VPNMKRRTNK VCRKSAFNPI  240
DKESREKARE RARERTREKM RTRRVLADAS NLNRLSSWNP FETVEDSAGT THQSQSVNHP  300
SLDVHLPEAD QEPSSHNAKE HWGENMAHED NSLAIMNKWS PTMMFNSLHN SGVLQEHQFA  360
EFQSLGKPWE AYSNHI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G013300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525648.20.0transcription factor CYCLOIDEA
RefseqXP_028231212.10.0transcription factor CYCLOIDEA-like
TrEMBLA0A445KIP30.0A0A445KIP3_GLYSO; Transcription factor TEOSINTE BRANCHED 1
TrEMBLK7KNH40.0K7KNH4_SOYBN; Uncharacterized protein
STRINGGLYMA05G07943.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.21e-20TCP family protein