PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G200500.1.p
Common NameGLYMA_04G200500, Glyma04g37750.2, ICE1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 466aa    MW: 51333.9 Da    PI: 6.5123
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G200500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.1e-11281323754
                          HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Glyma.04G200500.1.p 281 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 323
                          79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.764274323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-16277342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-9280323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14280329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.07E-12281327No hitNo description
Gene3DG3DSA:4.10.280.108.9E-16281336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.36E-6394454No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MMSRINNSLV WMDEPEAENT ASASWARNSK PNNNNIIITT GTTTTTGFVE TSNDLGSLCA  60
FKPMLDVDDE WYNNITNHHH HHQDMAFDPD NLLLHPSAVD SSSSCSPSHL QFFLPPNPKL  120
NPFDMGFLDP QASSSLPLLA SETTHFTPPQ TSTTTAFAGF QSLQEGSSNP LFLNRSNILR  180
PLESLPPSGA QPTLFQKRAA LRKNMNMSDN KKRKEKDEVV VEDVSFDGSG LNYDSDDLTE  240
SNYNDAKEKN GGGGVSSNAN STVTGLDQKG KKKGMPAKNL MAERRRRKKL NDRLYMLRSV  300
VPKISKMDRA SILGDAIEYL KELLQRINDL HNELESTPVG SSLTPVSSFH PLTPTPPTLP  360
CRIKEELCPS SLPSPNGQPA RVEVRLREGR AVNIHMFCGR KPGLLLSTMR AMDNLGLDIQ  420
QAVISCFNGF AMDIFRAEQC KEGQDVHPEQ IKAVLLDSAG YNGMM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270288KKKGMPAKNLMAERRRRKK
2282289ERRRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.130360.0flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3932230.0FJ393223.1 Glycine max inducer of CBF expression 1 (ICE1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001238560.10.0inducer of CBF expression 1
SwissprotQ9LSE21e-134ICE1_ARATH; Transcription factor ICE1
TrEMBLB8XJY50.0B8XJY5_SOYBN; BHLH transcription factor
STRINGGLYMA04G37750.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-122bHLH family protein
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]