PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G103900.1.p
Common NameGLYMA_04G103900, Glyma04g11290.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 315aa    MW: 34794.9 Da    PI: 7.195
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G103900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.69.6e-21138187255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Glyma.04G103900.1.p 138 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 187
                          59******9.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.06E-34137197No hitNo description
PROSITE profilePS5103223.143138195IPR001471AP2/ERF domain
SMARTSM003807.0E-38138201IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-32138196IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-23138196IPR016177DNA-binding domain
PfamPF008472.9E-14139187IPR001471AP2/ERF domain
PRINTSPR003672.8E-11139150IPR001471AP2/ERF domain
PRINTSPR003672.8E-11161177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MAAMMDFYSS STEFQLHSDP FRGELMEVLE PFMKSPFSTP SPSNSCFLST SYSPSPNNYS  60
PSLYSNGLSS IPNTTQNLIG FGQGQPTSLV GLNHLTPSQI SQIQAQIQIQ NHSNTLSFLG  120
PKPIPMKHVG MPPKPTKLYR GVRQRHWGKW VAEIRLPKNR TRLWLGTFDT AEEAALAYDK  180
AAYKLRGDFA RLNFPNLRHQ GSSVGGDFGE YKPLHSAVDA KLQAICEGLA ELQKQGKTEK  240
PPRKTRSKLA SPPENDNNND NNSCKVEAAS SSSEGSSPLS VLTFADVSEP QWEGDSDNFN  300
LQKYPSYEID WDSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-22137195160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.311890.0cotyledon| flower| hypocotyl| leaf| root| seed coat| somatic embryo| stem| vegetative bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G103900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310760.0KT031076.1 Glycine max clone HN_CCL_183 AP2-EREBP transcription factor (Glyma04g11290.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236953.20.0dehydration responsive element-binding protein 3
SwissprotQ8H1E44e-97RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A0K2CTG70.0A0A0K2CTG7_SOYBN; AP2-EREBP transcription factor (Fragment)
STRINGGLYMA04G11290.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.13e-68related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]
  5. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  6. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]