PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G044800.1.p
Common NameGLYMA_04G044800, LOC100800624
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 186aa    MW: 20303.4 Da    PI: 8.7907
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G044800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26086.82.9e-2719120197
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C++ C l+  +     p++q++++ +++k+FG+s ++ +++++p ++r+++++sl++eA+ r+ +Pv+Gavg++l++++
  Glyma.04G044800.1.p  19 SCNGCRVLRKRCSERCSLRSSLnwidcPHAQAHATLFLAKFFGRSDLMFFISSVPLNNRPALFQSLLFEACGRTVNPVNGAVGLLLSGNW 108
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelall 97 
                          +++q++++++l+
  Glyma.04G044800.1.p 109 HVCQAAVHTVLA 120
                          *****9887765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.90818124IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-2319118IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MVFLYDKDSP RQQKRKSMSC NGCRVLRKRC SERCSLRSSL NWIDCPHAQA HATLFLAKFF  60
GRSDLMFFIS SVPLNNRPAL FQSLLFEACG RTVNPVNGAV GLLLSGNWHV CQAAVHTVLA  120
GGVLRPLSEV VAPSESMFSH QFQSLASDSL KRSSDATAPV MSTMVSGESE ICSSDDGKKL  180
LNLFV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147152DSLKRS
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G044800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340895.11e-135LBD domain-containing transcription factor
RefseqXP_028227721.11e-135LOB domain-containing protein 39-like
SwissprotQ9SZE83e-55LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A0R0K3S61e-133A0A0R0K3S6_SOYBN; Uncharacterized protein
TrEMBLA0A445KVY61e-133A0A445KVY6_GLYSO; LOB domain-containing protein 39
STRINGGLYMA04G04750.11e-124(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.12e-48LOB domain-containing protein 39