PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G024800.3.p
Common NameGLYMA_04G024800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family E2F/DP
Protein Properties Length: 344aa    MW: 38851.6 Da    PI: 5.0953
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G024800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP84.11.1e-2674139171
              E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          r+++sL+llt+kf++l++ +++g+++ln  a+ L   +v  ++RRiYDi+NVLe+++liek++kn+i+wkg
  Glyma.04G024800.3.p  74 RYDSSLGLLTKKFVSLIQDAKDGTLDLNRTAEIL---EV--QKRRIYDITNVLEGVGLIEKTSKNHIKWKG 139
                          6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-2871140IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.4E-3574139IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.18E-1774137IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023196.6E-2576139IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440746.54E-26150257No hitNo description
CDDcd146605.22E-35150257No hitNo description
PfamPF164211.5E-24155254IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGQRYENNVF KSHISNIEAA PGMTQTVHLP PPLQTDPTIR GKQNGKPKGS RNAKSAAHRP  60
YADSTNSTAV NNCRYDSSLG LLTKKFVSLI QDAKDGTLDL NRTAEILEVQ KRRIYDITNV  120
LEGVGLIEKT SKNHIKWKGC DGLGPRELED QVNSLKAEVD SLYAEECKLD DCIRKKQELL  180
RNLEESESSQ KYLFITKEDI LGLPCFQNQE IIAIKAPKAS SIEVPDPDEE LGFRQRQYKM  240
IVRSAIGPIY LYLLSKDDHK FEDDSAKPMK LTNPSWNSDL YRKRGVGLLE SQNDENNPSE  300
RFSLQGSQAF GIQEITPTDF EMEDDYWFQS DPGVSQTELW GKE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A7e-2573140674PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0970030.0BT097003.1 Soybean clone JCVI-FLGm-15J6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014629912.10.0PREDICTED: transcription factor E2FC isoform X3
SwissprotQ9FV706e-91E2FC_ARATH; Transcription factor E2FC
TrEMBLI1JT390.0I1JT39_SOYBN; Uncharacterized protein
STRINGGLYMA04G02720.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.26e-82E2F/DP family protein