PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G008900.1.p
Common NameGLYMA_04G008900, LOC100808242
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 306aa    MW: 33861 Da    PI: 7.0332
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G008900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.91.4e-18220253134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          Cs+C++ kTp+WR gp g ktLCnaCG++y++ +
  Glyma.04G008900.1.p 220 CSHCHVQKTPQWRTGPLGAKTLCNACGVRYKSGR 253
                          *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.0E-7718304IPR016679Transcription factor, GATA, plant
SuperFamilySSF577161.43E-13214275No hitNo description
SMARTSM004014.2E-13214268IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.451214250IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.7E-14218251IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.90E-14219276No hitNo description
PfamPF003201.8E-16220253IPR000679Zinc finger, GATA-type
PROSITE patternPS003440220245IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEVAVAKALK PSLRREFIVQ QMLCEDIFSL NANTVAAGED FSVDDLFDFS NGSLHNEQQQ  60
EYDEGKQSLS ASEDRGEDDC NSNSTGVSYD SLFSTELAVP AGDLEDLEWV SHFVDDSLPE  120
LSLLYPVRSE EANRFVEPEP SAKKTPCFPW EMKITTKART VRNRKPSNSR MWSLGSPLLS  180
LPSSPSSPSS CSSSVREPPA KKQKKQAQAQ PVGAQIQRRC SHCHVQKTPQ WRTGPLGAKT  240
LCNACGVRYK SGRLFSEYRP ACSPTFCSDI HSNSHRKVLE IRKRKEVAQP DTGLAQAQTQ  300
MVPTC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.4040.0epicotyl| flower| hypocotyl| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522860.10.0PREDICTED: GATA transcription factor 7-like
TrEMBLI1JSK10.0I1JSK1_SOYBN; Uncharacterized protein
STRINGGLYMA04G01090.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
FabidsOGEF110834107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.14e-49GATA transcription factor 7