PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G227800.1.p
Common NameGLYMA_03G227800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 625aa    MW: 67831.9 Da    PI: 6.1024
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G227800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.84.7e-14376422455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  ErrRRdri +++  L+el+P++      K +Ka++L +A+eY+  Lq
  Glyma.03G227800.1.p 376 VHNLSERRRRDRIDEKMRALQELIPNC-----NKADKASMLDEAIEYLETLQ 422
                          5*************************8.....6****************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-18370431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.768372421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-18373430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.00E-8375426No hitNo description
PfamPF000101.9E-11376422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-15378427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MPLHELYRVA KGKLDDPIEM NNNTTCAVDQ SSVPNNDLFE LIWEKGQISV QGQSSRARVS  60
PNCKTLPSHT PIGYANNAIT TNTRMGKCGN LGAELNEIRR LVPSGEVDLS EEEEDMVMPW  120
FSYGRDDDSL QHGYSTDFFH EPSGVMNELS ASNNFSLLDR RNNCSKIFRD THKHSPFASV  180
RSRVADIAEN NANNVPPGSS GFSSLKMEKQ GPVMCSNNSS TMMNFSHFAK PAAIVKANLE  240
NIGLASRSGS VGIKIKSADE STKVELSRGE RPKKPAIHNQ DQDVTVSTKG DPSCNDVSKV  300
DQNQTSNIVV GESGNKGHEA VEKGVEPAVV SSSVCSGNDT EDSESQSEDV EEESVGVKKE  360
VHARGFGATR GRSAEVHNLS ERRRRDRIDE KMRALQELIP NCNKADKASM LDEAIEYLET  420
LQLQLQIMSM GSGLYVPAMM LPPGMQHMHA PHMGPFSPIG VGMQMRLGMG MLDANVIESS  480
RFIQVPQMQG TQLPITHTPG SSVLHGMARP NAQVFGHHPS QVHPMPMPHA PIFSFPGEPF  540
INPSSTLGLM ETVDKASSAF GLKDQIPQLV QNTNNGCNST NQMSTQCEAT IGGFEHSTLV  600
LNSGHATSAN DRGASNPSKE DKHL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1380385ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351800.0AC235180.1 Glycine max strain Williams 82 clone GM_WBb0008A05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006604779.10.0PREDICTED: transcription factor PIF3-like
TrEMBLA0A0R0KNC30.0A0A0R0KNC3_SOYBN; Uncharacterized protein
STRINGGLYMA03G38675.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.29e-47phytochrome interacting factor 3