PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G186100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 217aa    MW: 23959.6 Da    PI: 8.4168
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G186100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.0013153123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C+++F++   L  H  +H
  Glyma.03G186100.1.p 31 YECKTCNRCFPSFQALGGHRASH 53
                         99**********99999998887 PP

2zf-C2H214.30.00012126148123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg  Fs+   L  H+r+H
  Glyma.03G186100.1.p 126 HECSICGAEFSSGQALGGHMRRH 148
                          78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.77E-83053No hitNo description
PROSITE profilePS501579.2863158IPR007087Zinc finger, C2H2
PfamPF139121.3E-103155IPR007087Zinc finger, C2H2
SMARTSM003550.143153IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
SuperFamilySSF576672.77E-8121148No hitNo description
PfamPF139125.7E-13125149IPR007087Zinc finger, C2H2
PROSITE profilePS501579.743126148IPR007087Zinc finger, C2H2
SMARTSM003550.01126148IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280128148IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MANCLILLAQ GDRNNSTPKP SHNNKGGLYL YECKTCNRCF PSFQALGGHR ASHKKYYSKA  60
SAEEKQGVLA TFVNEVDNNN NHNHDNYYCD TTSTTLTLQL STALYNNNNS SSNTRMSTIN  120
AKCKVHECSI CGAEFSSGQA LGGHMRRHRN FGSAPTCGAI NANRESKKHN KDVLNLDLNL  180
PAPEDDHHRE SKLFPFQAKE KVIVFSATSS LVDCHY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.523670.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G186100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0939740.0BT093974.1 Soybean clone JCVI-FLGm-18A15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028225902.11e-161zinc finger protein ZAT5-like
TrEMBLC6T9161e-160C6T916_SOYBN; Uncharacterized protein
STRINGGLYMA03G34320.11e-160(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Representative plantOGRP23501035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.14e-43C2H2 family protein