PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G162600.1.p
Common NameGLYMA_03G162600, LOC100778998
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 154aa    MW: 16861.3 Da    PI: 5.7679
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G162600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-191869256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         +y+G+r+++ +g+++AeIrdp+     +r++lg+f+tae+Aa+a++aa+  ++g+
  Glyma.03G162600.1.p 18 RYRGIRRRP-WGKFAAEIRDPTRK--GARIWLGTFDTAEQAARAYDAAAFHFRGH 69
                         69*******.**********8542..4***********************99996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.83E-201877No hitNo description
Gene3DG3DSA:3.30.730.102.5E-321878IPR001471AP2/ERF domain
SMARTSM003804.6E-361882IPR001471AP2/ERF domain
PROSITE profilePS5103225.5541876IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-231877IPR016177DNA-binding domain
PfamPF008471.4E-131869IPR001471AP2/ERF domain
PRINTSPR003671.3E-111930IPR001471AP2/ERF domain
PRINTSPR003671.3E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MEGGRGVVNG NPSNADVRYR GIRRRPWGKF AAEIRDPTRK GARIWLGTFD TAEQAARAYD  60
AAAFHFRGHK AILNFPNEYG NVTPNPNNNY SSTSLPLPLL SSSSSSSSSF PSYYGEGSSQ  120
QQQGNDDDTF ELECLDNKLL EELLQQAPDR SGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-29279375Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G162600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150372e-92AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520599.11e-110ethylene-responsive transcription factor ERF098
RefseqXP_028223816.11e-110ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC55e-36ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A445LCD61e-109A0A445LCD6_GLYSO; Ethylene-responsive transcription factor ERF098
TrEMBLI1JP301e-109I1JP30_SOYBN; Uncharacterized protein
STRINGGLYMA03G31930.11e-110(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-26ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]