PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G162400.1.p
Common NameGLYMA_03G162400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 103aa    MW: 11268.6 Da    PI: 5.5683
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G162400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.72.2e-1117452755
                  AP2 27 krkrfslgkfgtaeeAakaaiaarkkleg 55
                         + +r++lg+f taeeAa+a+++a+ +++g
  Glyma.03G162400.1.p 17 HGARVWLGTFNTAEEAARAYDRAAFEMRG 45
                         349************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.907153IPR001471AP2/ERF domain
CDDcd000182.37E-201154No hitNo description
SMARTSM003801.2E-131259IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-181754IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-131754IPR016177DNA-binding domain
PfamPF008475.9E-81845IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MKGNQSKLSI EEYVGGHGAR VWLGTFNTAE EAARAYDRAA FEMRGTMAIL NFPNEHPPCN  60
VASLSKKSSS SNTELGKQVV VFQCLDHKLL EEILDCDGEN HQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1617563675Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G162400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150373e-37AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028223675.12e-70ethylene-responsive transcription factor ERF095-like
SwissprotQ9LTC51e-21ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLK7KFF02e-71K7KFF0_SOYBN; Uncharacterized protein
STRINGGLYMA03G31912.13e-72(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.13e-13ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]