PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G143100.1.p
Common NameGLYMA_03G143100, LOC100780949
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SBP
Protein Properties Length: 368aa    MW: 39304.6 Da    PI: 8.9538
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G143100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.93.8e-4069153177
                          --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTS........SEEETTT--SS--S-STTTT-------S-- CS
                  SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCs........rfhelsefDeekrsCrrrLakhnerrrkkq 77 
                          +CqvegCe+dls+ak+y++rhkvC +hsk+p+v+v+gl+qrfCqqCs        rfh+l efD++krsCrrrLa+hnerrrk+ 
  Glyma.03G143100.1.p  69 RCQVEGCEVDLSNAKTYYSRHKVCGMHSKSPTVIVAGLQQRFCQQCSselilaapRFHQLPEFDQGKRSCRRRLAGHNERRRKPP 153
                          6*********************************************9888888889***************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.8E-3363139IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.29967152IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.75E-3868157IPR004333Transcription factor, SBP-box
PfamPF031101.6E-2970151IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MASDAKLSSS ESLNGLKFGQ KIYFEDVGFA TPATSLTSSA TTATTVTSSS SSSSRKGRGG  60
SVQPAQPPRC QVEGCEVDLS NAKTYYSRHK VCGMHSKSPT VIVAGLQQRF CQQCSSELIL  120
AAPRFHQLPE FDQGKRSCRR RLAGHNERRR KPPPSSLLTS RYARLSSSAF DHSGRGGNFL  180
MELASYPKLS LRNSLPTPRS SELAPGNQTS TLSWHGNSET SSDLFLQGSV GGTSFAGPGH  240
PPGESYTGVT TSSCALSLLS NQTWGSRNPA PSLGLNNMVN FHGTPMTQPA ASSHGASIHQ  300
LPNTPWCFKG IDSGNCSPEG VPDLGLGQIS QPLSSQLHGE LDLSQQGRRH YMDLEQSRAY  360
ESAHWSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-29701511184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.630840.0leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G143100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006576852.10.0squamosa promoter-binding-like protein 9 isoform X1
RefseqXP_028225372.10.0squamosa promoter-binding-like protein 9 isoform X1
TrEMBLA0A445LCU80.0A0A445LCU8_GLYSO; Squamosa promoter-binding-like protein 9 isoform A
TrEMBLK7KF170.0K7KF17_SOYBN; Uncharacterized protein
STRINGGLYMA03G29901.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.13e-65squamosa promoter binding protein-like 9