PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G023000.1.p
Common NameGLYMA_03G023000, LOC100779541
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 252aa    MW: 25966.3 Da    PI: 8.0046
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G023000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.51.3e-39341341100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+++C++apyf +eq + +fa+vhk+FGasnv+kll ++p  +r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +
  Glyma.03G023000.1.p  34 PCGACKFLRRKCVPGCIFAPYFDSEQgATHFAAVHKVFGASNVSKLLLNIPVYKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVS 123
                          7***********************9989************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l+ael++l+ +
  Glyma.03G023000.1.p 124 LQAELSYLQGH 134
                          ******99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.92333135IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-3934132IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MSINSSCSIS GGSSSGGNNN GAGGSGGNNG GGSPCGACKF LRRKCVPGCI FAPYFDSEQG  60
ATHFAAVHKV FGASNVSKLL LNIPVYKRLD AVVTICYEAQ ARLRDPVYGC VAHIFALQQQ  120
VVSLQAELSY LQGHLATLEL PQPPPPPPPP SSPQATTMAP PVISIAELPS TVPATYDLSS  180
LFDPMAQSPS WAVQPRPIES RQYVGSGPSG PSATSASGGD LQALARELLH RHGSAPVVAC  240
SNPSYSHPIS K*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.627141e-155root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354100.0AC235410.1 Glycine max strain Williams 82 clone GM_WBb0128C24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003521944.10.0PREDICTED: LOB domain-containing protein 18-like
SwissprotO221318e-80LBD18_ARATH; LOB domain-containing protein 18
TrEMBLI1JKK90.0I1JKK9_SOYBN; Uncharacterized protein
STRINGGLYMA03G02620.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40515100
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.12e-76LOB domain-containing protein 18