PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G292000.1.p
Common NameGLYMA_02G292000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 73aa    MW: 8164.16 Da    PI: 5.7012
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G292000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26067.62.9e-213711481
               DUF260 14 kdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvil 81
                         +dC++  yfp ++p++fa+vh+++G +nv k+l+   +   re+a++s ++eA+ r++dP+yG++g+i+
  Glyma.02G292000.1.p  3 SDCIFYSYFPVNDPQRFACVHRIYGDNNVGKMLSGQTPASlREQATNSKYFEAQFRTQDPIYGCAGMIS 71
                         69*******************************97755555**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.547172IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-20371IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MPSDCIFYSY FPVNDPQRFA CVHRIYGDNN VGKMLSGQTP ASLREQATNS KYFEAQFRTQ  60
DPIYGCAGMI SE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-185712691LOB family transfactor Ramosa2.1
5ly0_B6e-185712691LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G292000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027333679.13e-32LOB domain-containing protein 23-like
SwissprotP594674e-24LBD23_ARATH; LOB domain-containing protein 23
SwissprotP594684e-24LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A445LVS58e-48A0A445LVS5_GLYSO; LOB domain-containing protein 23
TrEMBLK7KBG38e-48K7KBG3_SOYBN; Uncharacterized protein
STRINGGLYMA02G46161.11e-48(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36973066
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26620.12e-26LOB domain-containing protein 23