PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G262400.1.p
Common NameGLYMA_02G262400, LOC100799327
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 155aa    MW: 17090.6 Da    PI: 5.6158
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G262400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260144.14.2e-4561051100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +Ca+Ck+lrr+C+kdC++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+++l
  Glyma.02G262400.1.p   6 PCASCKLLRRRCTKDCIFAPYFPSDDPQKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSEL 95 
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          + +la++++e
  Glyma.02G262400.1.p  96 QMQLAVAQAE 105
                          *****99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.8515106IPR004883Lateral organ boundaries, LOB
PfamPF031957.4E-456103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MGGNSPCASC KLLRRRCTKD CIFAPYFPSD DPQKFAIVHK VFGASNVSKM LQELPVHQRA  60
DAVSSLVYEA NARVRDPVYG CVGAISYLQN QVSELQMQLA VAQAEILCIQ MEHEPVMPAA  120
SGIDLDYKSY FLQNDLSQFL GFDTSSNVMQ QFCP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358821e-143AC235882.2 Glycine max clone GM_WBc0011M13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519421.11e-112PREDICTED: LOB domain-containing protein 12-like
SwissprotQ8LBW32e-75LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A0B2S3051e-112A0A0B2S305_GLYSO; LOB domain-containing protein 12
TrEMBLI1JID91e-112I1JID9_SOYBN; Uncharacterized protein
STRINGGLYMA02G43030.11e-112(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6016318
FabidsOGEF16643497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.19e-77LBD family protein