PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G207100.1.p
Common NameGLYMA_02G207100, LOC100793339
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 366aa    MW: 42175.7 Da    PI: 6.7425
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G207100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.91.6e-1548107155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa a++ a++k++g
  Glyma.02G207100.1.p  48 SIYRGVTRHRWTGRYEAHLWDkHCWNEsqnKKgRQVYLGAYDNEEAAAHAYDLAALKYWG 107
                          57***********************55656446*************************98 PP

2AP251.62.3e-16150201155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Glyma.02G207100.1.p 150 SKYRGVARHHHNGRWEARIGKvF---G-NKYLYLGTYATQEEAATAYDLAAIEYRG 201
                          89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.18E-1748117IPR016177DNA-binding domain
CDDcd000183.67E-1148117No hitNo description
PfamPF008473.6E-1248107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-1649116IPR001471AP2/ERF domain
PROSITE profilePS5103220.23149115IPR001471AP2/ERF domain
SMARTSM003801.6E-2549121IPR001471AP2/ERF domain
PRINTSPR003675.5E-65061IPR001471AP2/ERF domain
CDDcd000181.73E-24150211No hitNo description
PfamPF008471.4E-12150201IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18150211IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.9E-18151210IPR001471AP2/ERF domain
PROSITE profilePS5103218.386151209IPR001471AP2/ERF domain
SMARTSM003804.8E-25151215IPR001471AP2/ERF domain
PRINTSPR003675.5E-6191211IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MAKKSQLRTQ KNNATNDDIN LNATNTVITK VKRTRRSVPR DSPPQRSSIY RGVTRHRWTG  60
RYEAHLWDKH CWNESQNKKG RQVYLGAYDN EEAAAHAYDL AALKYWGQDT ILNFPLSNYL  120
NELKEMEGQS REEYIGSLRR KSSGFSRGIS KYRGVARHHH NGRWEARIGK VFGNKYLYLG  180
TYATQEEAAT AYDLAAIEYR GLNAVTNFDL SRYIKWLKPN NTNSNNDQIS INLTNINNNC  240
TNNFIPNPDQ EQEVSFFHNQ DSLNNTIVEE ATLVPHQPRP ASATLALELL LQSSKFKEMV  300
EMTSVANLST QMESDQLPQC TFPDHIQTYF EYEDSNKYEE GDDLLFKFSE FSSIVPFYHC  360
DEFES*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.294170.0root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G207100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006575322.10.0AP2-like ethylene-responsive transcription factor At1g16060
RefseqXP_028212181.10.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
SwissprotQ94AN41e-107AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A445LRU90.0A0A445LRU9_GLYSO; AP2-like ethylene-responsive transcription factor isoform A
TrEMBLK7K9S70.0K7K9S7_SOYBN; Uncharacterized protein
STRINGGLYMA02G36880.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-100ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]