PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G198700.1.p
Common NameGLYMA_02G198700, LOC100811762
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family E2F/DP
Protein Properties Length: 469aa    MW: 51113.3 Da    PI: 4.7737
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G198700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP84.86.6e-27148213171
              E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          r+++sL+llt+kf++l++++e+gi++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+i+wkg
  Glyma.02G198700.1.p 148 RYDSSLGLLTKKFINLVKHAEDGILDLNKAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIHWKG 213
                          6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.7E-29145215IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.2E-34148213IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467856.67E-17148211IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.7E-24150213IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440747.32E-33226330No hitNo description
CDDcd146601.49E-48226330No hitNo description
PfamPF164218.8E-34229328IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MSSAAGVPDR LASQPRGAAG APALPPLKRH LAFVTKPPFA PPDEYHSFSS ADSRRAADEA  60
VVVRSPYMKR KSGMTDSEGE SQAQKWSNSP GYTNVSNVTN NSPFKTPVSA KGGRAQKAKA  120
SKEGRSCPPT PMSNAGSPSP LTPASSCRYD SSLGLLTKKF INLVKHAEDG ILDLNKAAET  180
LEVQKRRIYD ITNVLEGIGL IEKKLKNRIH WKGIESSTSG EVDGDISVLK AEVEKLSLEE  240
QGLDDQIREM QERLRNLSEN ENNQKCLFVT EEDIKGLPCF QNETLIAIKA PHGTTLEVPD  300
PEEAVDYPQR RYRIILRSTM GPIDVYLISQ FEEKFEEVNG AELPMIPLAS SSGSNEQLMT  360
EMVPAECSGK ELEPQTQLSS HAFSDLNASQ EFAGGMMKIV PSDVDNDADY WLLSDADVSI  420
TDMWRTDSTV DWNGIDMLHP DFGIISRPQS PSSGLAEVPS TGANSIQK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A3e-25143214274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0930461e-147BT093046.1 Soybean clone JCVI-FLGm-15I8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006575291.10.0PREDICTED: transcription factor E2FA
SwissprotQ9FNY01e-163E2FA_ARATH; Transcription factor E2FA
TrEMBLI1JGJ70.0I1JGJ7_SOYBN; Uncharacterized protein
STRINGGLYMA02G35850.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12251749
FabidsOGEF19473490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.11e-147E2F transcription factor 3