PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.02G195700.1.p

Common Name

GLYMA_02G195700

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 293aa MW: 32311.6 Da PI: 5.7325

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G195700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	115.6	2.1e-36	12	67	5	60
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 + +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg++kn++ Glyma.02G195700.1.p 12 SPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCKKNRR 67 568***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	28.397	13	67	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.6E-31	13	67	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-22	15	58	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	15	51	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MESGWKPEVE MSPNCPRCGS SNTKFCYYNN YSLTQPRYFC KGCRRYWTKG GSLRNVPVGG 60 GCKKNRRGNK TLLRQSIDDH NNNPLGHSYD PRIRASSASS SSSVVTDGPN IDLALVFANF 120 LNQKPNSSEG GVESSTNPDQ EQTVFDPSLE NNSRLSNTDV VGPSTLPEEL GLTGCLNLPE 180 QQPHTHSSEA NNNNNQMCYG EFNTMQTLQK DGIEQYSSHG GAMNFELPPL PGEGEASHDH 240 HMMWSNSEMM INHHAFQVTQ PPLLGLEVHD ADLLIGNWSP FDSPKDTSFS RP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G195700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	7e-90	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025983088.1	0.0	dof zinc finger protein DOF3.5
Refseq	XP_028189711.1	0.0	dof zinc finger protein DOF3.5-like
TrEMBL	A0A0R0KYP3	0.0	A0A0R0KYP3_SOYBN; Uncharacterized protein
STRING	GLYMA02G35296.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1817	33	94
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	6e-42	Dof family protein

Link Out ? help Back to Top
Phytozome	Glyma.02G195700.1.p