PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G160200.1.p
Common NameGLYMA_02G160200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 154aa    MW: 17606.9 Da    PI: 9.7966
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G160200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.33.2e-1462108455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  ErrRRdriN+++  L+el+P +      K  Ka++L + +eY+ksLq
  Glyma.02G160200.1.p  62 VHNLSERRRRDRINEKMKALQELIPRC-----NKSGKASMLDEPIEYLKSLQ 108
                          6*************************8.....5888999************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-1956121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.43158107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1959116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.69E-1361112No hitNo description
PfamPF000108.4E-1262108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-1464113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MIRAFLLSLF YILQSVYIMF YATYIFLFPL VSLQKDVDFE SPEAKKQVRG STSTKRSHAA  60
EVHNLSERRR RDRINEKMKA LQELIPRCNK SGKASMLDEP IEYLKSLQLQ VQMMSMGCGI  120
IPMIFPGIQQ YMPPMGMAIG MGMGMGMEMR TYT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16671ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.618791e-172leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311141e-169KT031114.1 Glycine max clone HN_CCL_148 bHLH transcription factor (Glyma10g04890.2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006575134.16e-84PREDICTED: transcription factor PIF1-like isoform X1
RefseqXP_014623001.16e-84PREDICTED: transcription factor PIF1-like isoform X1
SwissprotQ8GZM76e-42PIF1_ARATH; Transcription factor PIF1
TrEMBLA0A0R0L6Z71e-110A0A0R0L6Z7_SOYBN; Uncharacterized protein
STRINGGLYMA10G04890.23e-57(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
FabidsOGEF46073351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.17e-39phytochrome interacting factor 3-like 5