PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G141000.1.p
Common NameGLYMA_02G141000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 356aa    MW: 40088.3 Da    PI: 10.271
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G141000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.22.6e-31289347360
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                          D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+k
  Glyma.02G141000.1.p 289 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPTMLIVTYEGEHNHPK 347
                          99***********************9988****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.1E-17240285IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.0E-33275347IPR003657WRKY domain
PROSITE profilePS5081129.998282348IPR003657WRKY domain
SuperFamilySSF1182905.23E-27285347IPR003657WRKY domain
SMARTSM007744.7E-38287347IPR003657WRKY domain
PfamPF031065.5E-27289346IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEEVEQANRV AVESCHRVLS LLSQPRDQVQ HRNLMVETGE AVVRFKKVVS LLHSGMGHAR  60
VRKVKNPQIP FSHQSIFLDN PNCKTINNHH FKNLQFPQTS FPDNSIQELG STIKNSLSLG  120
QPSLELSSNG KSPLHLTQQA SSNHYHFFQQ QQQQQQQRLL LQQQQQQQQQ MKHQAEMMFR  180
RNNSGINLNF DSTSCTPTMS STRSFISSLS IDGSVANLDG SAFHLIGAPH SSDQNSQQHK  240
RKCSARGDEG SLKCGSSARC HCSKKRKHRV KRAIKVPAIS NKLADIPPDD YSWRKYGQKP  300
IKGSPHPRGY YKCSSMRGCP ARKHVERCLE EPTMLIVTYE GEHNHPKLPT QSANA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-202833491075WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.157480.0pod| root| seed coat| somatic embryo| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G141000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3753520.0EU375352.1 Glycine max transcription factor (WRKY22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237604.20.0WRKY transcription factor 22
RefseqXP_028205918.10.0probable WRKY transcription factor 21
SwissprotO043361e-127WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A0B2RD390.0A0A0B2RD39_GLYSO; Putative WRKY transcription factor 21
TrEMBLA0A0R0KWS70.0A0A0R0KWS7_SOYBN; Uncharacterized protein
STRINGGLYMA02G15920.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Representative plantOGRP18171541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-119WRKY DNA-binding protein 21