PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G121300.4.p
Common NameGLYMA_02G121300, LOC100820149
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SBP
Protein Properties Length: 483aa    MW: 54008.3 Da    PI: 7.1199
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G121300.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.34e-42180256177
                          --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                  SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                          +Cqv gC++dls+ k+yh+rhkvC++hsk+++v+v+g+eqrfCqqCsrfh l efD++krsCrrrLa+hnerrrk+q
  Glyma.02G121300.4.p 180 VCQVYGCNMDLSSSKDYHKRHKVCDAHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQ 256
                          6**************************************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-34175242IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.753178255IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.55E-40179260IPR004333Transcription factor, SBP-box
PfamPF031105.6E-32181254IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MESWSYVPEE KGYLFSDEMD FSLDAFMRSR KALVEWDNKS NFVEKDGFNS DREVVRSMEF  60
VDLGFPDLLQ KSFHGSQPLE TSSYELDSNN SSKRGNSSPH VIALDSSMGE EESDSKHLSS  120
LVESKTHDSS LIDLKLGRLA DCKGASSDKV AKEGFTLTSI HPTTLWKRAR TSSLPAQAPV  180
CQVYGCNMDL SSSKDYHKRH KVCDAHSKTA KVIVNGIEQR FCQQCSRFHL LAEFDDGKRS  240
CRRRLAGHNE RRRKPQFDYV TGKQHKILQS YQGTKYLGSS LQNKPQFPFQ DIFQSSILFP  300
GKHAQFSQSG RVKLEEDSIY GSQLAAPVTL DQESSSCALS LLSDQSQYPS CHAAGNPLAS  360
PQVFSGIRIP DRDSRVSKKP LRISPADKLA PNESFPCDTI SKEVIKNRSA ATFSSVGHAL  420
EVHNGDDICQ PSELFSIKHS LSSEHAATVD LFQLSSHLQR VEQQRNSVLV KWENEDYCFP  480
TV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-29172254284squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.119342e-60epicotyl
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO141265642e-60
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G121300.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520128.10.0squamosa promoter-binding-like protein 6
RefseqXP_025981133.10.0squamosa promoter-binding-like protein 6
RefseqXP_025981134.10.0squamosa promoter-binding-like protein 6
RefseqXP_028203744.10.0squamosa promoter-binding-like protein 6 isoform X2
TrEMBLA0A445LN590.0A0A445LN59_GLYSO; Squamosa promoter-binding-like protein 6 isoform A
TrEMBLK7K7W50.0K7K7W5_SOYBN; Uncharacterized protein
STRINGGLYMA02G13371.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.11e-65SBP family protein