PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G074800.1.p
Common NameGLYMA_02G074800, LOC100778791
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 477aa    MW: 54810.4 Da    PI: 6.6848
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G074800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2913.3e-89884741374
                 GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                          l++lLl+ A+av++++ +  +a + L  l +++s +gd++qR++ayf+ +Laarl+ + s  y+ l  ++ts    +ee+ a++ ++ vs
  Glyma.02G074800.1.p  88 LIHLLLSTATAVDDDQRNycAALENLIDLYQTVSLTGDSVQRVVAYFADGLAARLLTKKSPFYDMLMEEPTS----EEEFLAFTDLYRVS 173
                          689*********986554449999***************************************999888886....788889999***** PP

                 GRAS  89 PilkfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAee 171
                          P+++f+h+taNqaIlea e+e     +++H+iDfdis+G+QWp+L+q+L++++  ++   lRiTg+g+    + +el+et+ rL +f + 
  Glyma.02G074800.1.p 174 PYYQFAHFTANQAILEAYEEEeernnKALHVIDFDISYGFQWPSLIQSLSQKAtsGKRIFLRITGFGN----NLKELQETEARLVSFSKG 259
                          *******************9988887889*********************9997455559********....99***************9 PP

                 GRAS 172 lg..vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerfl 258
                          +g  + fef+ ++     + +  +Lr +++E +aVnlv  l +l   s       +++L +v slsP +vv+v qe ++ + ++Fl rf+
  Glyma.02G074800.1.p 260 FGnhLVFEFQGILR---GSSRAFNLRKRKNEIVAVNLVSYLNTLS--SFMK---VSHTLGFVHSLSPSIVVLVKQEGSCrSLKTFLSRFT 341
                          97336788888533...34456799999***********999997..3333...457*********************98999******* PP

                 GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre....rhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                          e+l+y++a+fdsl+  lp es er  +E++llg+ei++++    ++ +e    + e++e+W+ r+e+ GF   ++s+k + qaklll++ 
  Glyma.02G074800.1.p 342 ESLHYFAAMFDSLDDCLPLESTERLRIEKQLLGKEIKSMLNYDMDDGVEyycpKYERMETWKGRMENHGFVGRKISSKCVIQAKLLLKMR 431
                          ****************************************999998777444478********************************986 PP

                 GRAS 345 k.s.......dg...yrveee.sgslv.lgWkdrpLvsvSaWr 374
                                    +g   +rv e+ +g ++ lgW++r L++vSaW+
  Glyma.02G074800.1.p 432 ThYyplqfeeEGgggFRVSERdEGRVIsLGWQNRFLLTVSAWQ 474
                          5111111111212336666654555558**************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.27162441IPR005202Transcription factor GRAS
PfamPF035141.1E-8688474IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MEDSEEEELL NLTLSVDAGR ERRIKKGRTR DNNNNTNSVI IPMKSNDGYE GKIFRLLQMR  60
ELMLRQDHRR KGVLLEDVNN NNNNGLPLIH LLLSTATAVD DDQRNYCAAL ENLIDLYQTV  120
SLTGDSVQRV VAYFADGLAA RLLTKKSPFY DMLMEEPTSE EEFLAFTDLY RVSPYYQFAH  180
FTANQAILEA YEEEEERNNK ALHVIDFDIS YGFQWPSLIQ SLSQKATSGK RIFLRITGFG  240
NNLKELQETE ARLVSFSKGF GNHLVFEFQG ILRGSSRAFN LRKRKNEIVA VNLVSYLNTL  300
SSFMKVSHTL GFVHSLSPSI VVLVKQEGSC RSLKTFLSRF TESLHYFAAM FDSLDDCLPL  360
ESTERLRIEK QLLGKEIKSM LNYDMDDGVE YYCPKYERME TWKGRMENHG FVGRKISSKC  420
VIQAKLLLKM RTHYYPLQFE EEGGGGFRVS ERDEGRVISL GWQNRFLLTV SAWQPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-38874743375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518339.10.0PREDICTED: protein SCARECROW-like
TrEMBLK7K6Y40.0K7K6Y4_SOYBN; Uncharacterized protein
STRINGGLYMA02G08241.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP81961117
FabidsOGEF62002952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.15e-52GRAS family protein