PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G058400.1.p
Common NameGLYMA_02G058400, GLYMA_02G058500, LOC100814444, LOC100818698
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 526aa    MW: 54441.9 Da    PI: 7.8876
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G058400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-056082123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C+k F r  nL+ H r H
  Glyma.02G058400.1.p 60 FVCEICNKGFQRDQNLQLHRRGH 82
                         89*******************88 PP

2zf-C2H211.20.0011136158123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k +  +s+ k H +++
  Glyma.02G058400.1.p 136 WKCDKCSKKYAVQSDWKAHSKVC 158
                          58*****************9877 PP

3zf-C2H211.60.00084166184523
                          TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                          dCg++Fsr++++ +H   +
  Glyma.02G058400.1.p 166 DCGTVFSRRDSFITHRAFC 184
                          9**************8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-55982IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.06E-75982No hitNo description
PfamPF121718.4E-56082IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9496082IPR007087Zinc finger, C2H2
SMARTSM003550.0176082IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SMARTSM00355190101131IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.4E-4124157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.06E-7131156No hitNo description
SMARTSM00355150136156IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MTVDLDNAST ASGEAASVSS SGNQTKPAAP KKKRNLPGMP DPEAEVIALS PKTLLATNRF  60
VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RSSKEVRKRV YVCPEPTCVH HDPSRALGDL  120
TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD WKAHSKVCGT REYKCDCGTV FSRRDSFITH  180
RAFCDALAEE NARSHTVVKD ISENDSKVLI GDSPPPQPVA ATVAATTAAA TTTTTTTTIT  240
STTQANSVMS SCLQTHNLDL PENNPPQVIE EPQAATATAI SGSCGSSSSC STSNGGATCN  300
SNSSSSVFAS LFASSTASVT LQSQTPAFSD LIRAMGPPEH PADQISGPSS EAISLCLSTT  360
SASPIFATGG RQYASSSPHP AMSATALLQK AAQMGAAATN ASLLRGLGIV SSSPLDSTSS  420
GQQNVLQWGH QQQLEPESGS VAAAGLGLGL PCEDGGSGLK ELMMGTSSMF GPKHTTLDFL  480
GLGMAAGGTA GGGLSALITS IGGGLDVTAA FGNGDFSGKD IGSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-35132193364Zinc finger protein JACKDAW
5b3h_F6e-35132193364Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.141970.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269|PubMed:21571950}.
UniprotTISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269|PubMed:21571950}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G058400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518037.10.0protein indeterminate-domain 2
RefseqXP_003518040.10.0protein indeterminate-domain 2
SwissprotQ9LVQ71e-173IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLK7K6N30.0K7K6N3_SOYBN; Uncharacterized protein
STRINGGLYMA02G06500.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-109indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]