PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G051100.1.p
Common NameGLYMA_02G051100, LOC100786449
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 352aa    MW: 38823.2 Da    PI: 7.4249
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G051100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.71.5e-18269303135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l
  Glyma.02G051100.1.p 269 CSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRL 303
                          *******************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.47E-14261325No hitNo description
PROSITE profilePS5011411.939263299IPR000679Zinc finger, GATA-type
SMARTSM004012.1E-16263317IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-14267301IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440269294IPR000679Zinc finger, GATA-type
CDDcd002026.46E-15269316No hitNo description
PfamPF003201.9E-16269303IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MKERGTFQPL FNALPNSLII LQSFNFIPSL LSTTPSSFPS FLLSQAEKEM ECLEAALKSS  60
FRKDMALKQT LFLEEFSSAS NVQNVVASSD DLFVDDLLNF SLLENNTNNN NNNEEPDQQL  120
NNHDSTTPQN NQENYNYNPS FNDNNFNTEL TVPAEEEVAD LEWLSRFVED SNFSEYSLPF  180
PATVTEKVKV KSPEPGNTAF TFKTPVPAKA RSKRTRTGVR VWPLKSPSLA AASSTTTSSS  240
SSSSPSSPQR ADSRAKKRAA ADGGAARRCS HCGVQKTPQW RTGPLGAKTL CNACGVRYKS  300
GRLLPEYRPA CSPTFSSELH SNHHRKVLEM RRKKEDVPEP DTASPPSLPG F*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.440530.0seed coat
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519878.10.0PREDICTED: GATA transcription factor 5
SwissprotQ9FH571e-66GATA5_ARATH; GATA transcription factor 5
TrEMBLK7K6I90.0K7K6I9_SOYBN; Uncharacterized protein
STRINGGLYMA02G05710.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
FabidsOGEF110834107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.12e-46GATA transcription factor 7