PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G012000.1.p
Common NameGLYMA_02G012000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 467aa    MW: 52769.8 Da    PI: 6.8174
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G012000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS209.91.4e-641084642374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl....fsev 87 
                           + Ll++Ae v  +++e+a+ lL+   + +s+ + ++qR++++f++AL +r+ r++ + +   +++++ e+++ e+l +++      ++ 
  Glyma.02G012000.1.p 108 AQFLLAAAERVGCQQFERASILLSSHFQWNSSGDGAVQRVVFHFAQALLERIRRETGGKVTLNKCEKNCEREMFEKLRSDTNmavtCHQK 197
                          6789**************************************************777777666777777777666665554434448899 PP

                 GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                           P+ +  ++   qaI+e v ++++vH i fdi+ G+Q  aL+qaLa+R+ ++   l++T++g    + k+eleetg+ L  f +++    
  Glyma.02G012000.1.p 198 IPFNQEMQFSGVQAIVENVTSKTKVHLINFDIGCGVQCTALMQALAERQeKQVELLKVTAIGL---QGKTELEETGKGLVVFVTSI---- 280
                          9************************************************455569********...589**********8776554.... PP

                 GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                                     ++++e++ ++ +Ea+aV + ++l +++++s sle+    +++++++++P ++vv e ea hns+s ++rf+eal +y+a
  Glyma.02G012000.1.p 281 ----------IEIKVEQFGIEDNEAVAVYSPYMLRTMVSDSDSLEH----LMRVMRKIRPSIMVVLEVEAMHNSPSCVNRFIEALFFYAA 356
                          ..........367889**********************99999998....**************************************** PP

                 GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveees 355
                          +fd++ + + +++e ri +E   l++ i+n+va+e  er+ r+ +   Wr+ + +  + + ++se+   qa+l+ +k++ ++  +v+ + 
  Glyma.02G012000.1.p 357 FFDCIGTCMKQDHECRIRIEGI-LSEGIRNIVAMEDGERKVRNVKIDVWRRFFARYRMVETTFSESSLYQANLVAKKFAcGNFCTVDRNG 445
                          ********************99.********************************************************88888999999 PP

                 GRAS 356 gslvlgWkdrpLvsvSaWr 374
                          ++l+ gWk+ p+ s+S+W+
  Glyma.02G012000.1.p 446 KCLIVGWKGTPIHSISVWK 464
                          9*****************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098521.80381443IPR005202Transcription factor GRAS
PfamPF035144.8E-62108464IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MIEEFNFEPI QQPKQPLQET KEPKKNKQVL PSSLASLELL SNYGSSDSSV QTCVGPQKLS  60
TEEIMRLAGA RYIQHSTQLC DDVCIPVHPY GFGLGVLSQE ENRDIELAQF LLAAAERVGC  120
QQFERASILL SSHFQWNSSG DGAVQRVVFH FAQALLERIR RETGGKVTLN KCEKNCEREM  180
FEKLRSDTNM AVTCHQKIPF NQEMQFSGVQ AIVENVTSKT KVHLINFDIG CGVQCTALMQ  240
ALAERQEKQV ELLKVTAIGL QGKTELEETG KGLVVFVTSI IEIKVEQFGI EDNEAVAVYS  300
PYMLRTMVSD SDSLEHLMRV MRKIRPSIMV VLEVEAMHNS PSCVNRFIEA LFFYAAFFDC  360
IGTCMKQDHE CRIRIEGILS EGIRNIVAME DGERKVRNVK IDVWRRFFAR YRMVETTFSE  420
SSLYQANLVA KKFACGNFCT VDRNGKCLIV GWKGTPIHSI SVWKFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-2911346414375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511766.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A0R0KPV60.0A0A0R0KPV6_SOYBN; Uncharacterized protein
TrEMBLK7K5W50.0K7K5W5_SOYBN; Uncharacterized protein
STRINGGLYMA02G01530.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP2520734
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-39RGA-like 2