PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G006300.1.p
Common NameGLYMA_02G006300, LOC100781117
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 169aa    MW: 18195.6 Da    PI: 5.0661
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G006300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.2e-192171255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55
                         +y+GVr+++ +g+++AeIrd      ++ +r +lg+f taeeAa+a+++a+ +++g
  Glyma.02G006300.1.p 21 KYRGVRRRP-WGKFAAEIRD----SmRQgQRLWLGTFNTAEEAARAYDRAAYAMRG 71
                         8********.**********....33235*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-312181IPR001471AP2/ERF domain
PfamPF008474.9E-152171IPR001471AP2/ERF domain
SMARTSM003809.6E-372185IPR001471AP2/ERF domain
CDDcd000188.64E-202180No hitNo description
PROSITE profilePS5103223.7492179IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-242180IPR016177DNA-binding domain
PRINTSPR003673.1E-112233IPR001471AP2/ERF domain
PRINTSPR003673.1E-114561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MDEEGGSRVK ANKDEDQEHV KYRGVRRRPW GKFAAEIRDS MRQGQRLWLG TFNTAEEAAR  60
AYDRAAYAMR GPFAVLNFPN EYPPLAIGAS SSSSSSSSSS SSSSSSSSSS SSSSSNASSA  120
SALASPSSSH VEGSGRSEQA NQVIEFEYFD DKLLEELLGY EDKNKPDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-321815311114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G006300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006574514.11e-117ethylene-responsive transcription factor ERF096
SwissprotQ9LTC55e-37ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLI1JB921e-116I1JB92_SOYBN; Uncharacterized protein
STRINGGLYMA02G00890.11e-116(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.14e-24ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]