PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G209100.1.p
Common NameGLYMA_01G209100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 299aa    MW: 33204.9 Da    PI: 6.1864
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G209100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001426123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ykC+ C+++Fs+   L  H++ H
  Glyma.01G209100.1.p  4 YKCKLCSRTFSNGRALGGHMKAH 26
                         9*******************998 PP

2zf-C2H214.88.4e-05204226123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ Cgk+F+++  L +H + +
  Glyma.01G209100.1.p 204 HQCQSCGKTFRSSRALGSHRSIC 226
                          79*****************9876 PP

3zf-C2H212.40.00048236258123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp C+k+F +   L  H r+H
  Glyma.01G209100.1.p 236 FQCPFCSKVFGSGQALGGHKRSH 258
                          89**************9999999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139127.2E-8327IPR007087Zinc finger, C2H2
SuperFamilySSF576671.88E-5329No hitNo description
PROSITE profilePS5015711.697431IPR007087Zinc finger, C2H2
SMARTSM003550.0084426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SMARTSM0035546204224IPR015880Zinc finger, C2H2-like
PfamPF139123.9E-4204223IPR007087Zinc finger, C2H2
SuperFamilySSF576671.69E-8204258No hitNo description
PROSITE profilePS501579.182204233IPR007087Zinc finger, C2H2
SMARTSM003550.013236258IPR015880Zinc finger, C2H2-like
PfamPF139125.1E-11236258IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.076236263IPR007087Zinc finger, C2H2
PROSITE patternPS000280238258IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MERYKCKLCS RTFSNGRALG GHMKAHLATL PLPPQNQQPP LSPSAAASFS SNSSSEQEQA  60
THDEKSLIYG LRENPKKCFR LADPEFDTGS VVQDRESETE SKNPTRRRSK RTRRPVNLEQ  120
KKPKLSFMES PEPVSSVSDT SPEEDVAMCL MMLSRDRWSK NNNINVVNVN DEDVVEEEEE  180
EEEEEEEGGR SVLEIKLRRV RGKHQCQSCG KTFRSSRALG SHRSICEGSG NDSKIFQCPF  240
CSKVFGSGQA LGGHKRSHLM PSSSTTANND SVRLKESFID LNLPAPPEDD DLSVVSDA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.376180.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G209100.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9671230.0KC967123.1 Glycine max C2H2-type zinc finger protein 1 (ZFP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304367.20.0C2H2-type zinc finger protein 1
TrEMBLI1J9V70.0I1J9V7_SOYBN; Uncharacterized protein
STRINGGLYMA01G41780.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Representative plantOGRP24041030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-31C2H2-like zinc finger protein